Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6671 127 5e-24 seq169730 104 6e-17 >seq6671 Length=4556 Score = 127 bits (140), Expect = 5e-24 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || ||||| |||||| | ||||| || |||||| Sbjct 3755 CAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCAGAC 3814 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||| ||||| ||||| || ||||| |||||||| Sbjct 3815 ACCATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAG 3874 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||| | |||||||| | || |||| |||| || || | Sbjct 3875 CGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTAC-CTTGTCCGACTACAATAT 3933 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| ||||| || || || || |||| Sbjct 3934 CCAGAAAGAGTCTACTCTTCA-CTTG 3958 Score = 127 bits (140), Expect = 5e-24 Identities = 154/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || ||||| |||||| | ||||| || |||||| Sbjct 4211 CAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAGCCATCAGAC 4270 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||| ||||| ||||| || ||||| |||||||| Sbjct 4271 ACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAGCAG 4330 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || ||| | |||||||| | || |||| |||| || || | Sbjct 4331 CGTTTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGTAC-CTTGTCCGACTACAATAT 4389 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| ||||| || || || || |||| Sbjct 4390 CCAGAAAGAGTCTACTCTTCA-CTTG 4414 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || ||||| |||||| | ||||| ||| |||||| Sbjct 3983 CAGATCTTCGTCAAGACTTTGACCGGCAAAACCATCACCTTGGAGGTCGAACCATCAGAC 4042 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||| ||||| ||||| || || || ||||| || Sbjct 4043 ACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAG 4102 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| | || | |||| || || || Sbjct 4103 CGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGACTACAATATC 4162 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 4163 CAGAAGGAATCCACTCTTCA-CTTG 4186 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || |||||||| ||||| || || || |||||| | || || || Sbjct 3521 AAAATGC---AAATCTTTGTGAAAACACTCACTGGTAAGACAATCACCTTGGAAGTCGAG 3577 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || || ||| || || || ||||||||||| || || || Sbjct 3578 CCATCTGACACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCA 3637 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || | |||||||| || || || | |||||||| | || | |||| Sbjct 3638 GACCAACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACATTGTCCGAC 3697 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || |||| || ||||| || || || |||| Sbjct 3698 TACAATATCCAGAAGGAATCCACTCTTCA-CTTG 3730 >seq169730 Length=1905 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| ||||| || ||||| || ||| || Sbjct 1748 CAGATCTTCGTAAAGACCCTTACGGGCAAAACCATCACTCTTGAGGTTGAGCCCTCTGAT 1807 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||| ||||| ||||| || || || Sbjct 1808 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCTCCAGATCAACAG 1867 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | || || || || ||||| | |||||||| Sbjct 1868 CGTTTGATATTTGCTGGCAAACAATTGGAAGATGG 1902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201072292822794