Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6671 111 1e-19 >seq6671 Length=4556 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||||||||| || |||| || || || ||| ||||| || || |||||||| Sbjct 3979 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 3920 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| ||| | || || | ||||||||| || || |||| ||||| ||||| | || Sbjct 3919 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3860 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| | || | ||||| | | ||||| | ||| | Sbjct 3859 AATACCTTCCTTGT-CTTGAATCTTGGCCTTCACGTTCTCAATGGTGTCTGATGGCTCGA 3801 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 3800 CCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3751 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||||||||| ||||||| || || ||| |||||||| || || |||||||| Sbjct 4207 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 4148 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | |||||||| ||||| |||| ||||||||||| | || Sbjct 4147 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 4088 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| | || | ||| | | | ||||| | || | Sbjct 4087 AATACCTTCCTTGT-CTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGTTCGA 4029 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 4028 CCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 3979 Score = 107 bits (118), Expect = 2e-18 Identities = 172/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||||||||| ||||||| || || ||| |||||||| || || |||||||| Sbjct 3751 GCCACCGCGTAGACGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 3692 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || | |||||||| ||||| |||| ||||||||||| | || Sbjct 3691 CAATGTGCGACCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGGTCTGGTGG 3632 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | || |||| | || |||| |||| ||| | | |||||| | ||| | Sbjct 3631 AATACCTTCTTTGT-CTTGGATTTTAGCTTTAACATTTTCAATAGTGTCAGATGGCTCGA 3573 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATGG 41873 | |||| || || || ||||| || || || || || || || ||||| || ||| | Sbjct 3572 CTTCCAAGGTGATTGTCTTACCAGTGAGTGTTTTCACAAAGATTTGCATTTT---GATAG 3516 Query 41874 ATCT 41877 |||| Sbjct 3515 ATCT 3512 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||||||||| || |||| || || || ||| ||||| || || |||||||| Sbjct 4435 GCCACCGCGTAGACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCGGA 4376 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| ||| | || || | ||||||||| || || |||| ||||| ||||| | || Sbjct 4375 CAAGGTACGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 4316 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| | || | ||| | | | ||||| | ||| | Sbjct 4315 AATACCTTCCTTGT-CTTGAATCTTGGCCTTGACATTCTCAATGGTGTCTGATGGCTCGA 4257 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 4256 CCTCCAAGGTGATGGTTTTGCCGGTCAAAGTCTTGACGAAGATCTGCATG 4207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461307729101200