Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq25027 226 3e-54 >seq25027 Length=9736 Score = 226 bits (250), Expect = 3e-54 Identities = 563/850 (66%), Gaps = 6/850 (1%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||| || || || || ||||| || || ||| ||||||||||| |||||||| Sbjct 6271 TTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAACTCCATGAAATTGAAAGGATTT 6212 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || | || || | || | ||||| || | | | | ||||| ||||||| Sbjct 6211 GGCGTGTTGTAGATTTTCTCGACT--CCCAGCTCCACTAGAAGACGGTCCGCGACAAATT 6154 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || || | |||| | || ||||||||| || || | ||| |||||||| || | Sbjct 6153 CAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGATCATGTCTACTGGAAGAGCGTCTG 6094 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGG 16931 |||| ||| || || || || || ||||| || || | || |||||||| | Sbjct 6093 TCAAGAATTCCTGTTCAATGACCACGGCTTCACGGATGATTTCAATAATTCGTTCCTTTG 6034 Query 16932 ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991 ||| | || | ||||| ||||| || || |||||||| || || | ||| |||| Sbjct 6033 TCGGCTTCTGCACCAAGTGTTTGAACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGT 5974 Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACC 17051 ||| || ||||| || || || ||||| || ||||| ||||||||||||| || Sbjct 5973 CTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCC 5914 Query 17052 AAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTA 17111 |||| || | ||| || ||| || || || || || || | |||||| || || | Sbjct 5913 AAAAGATAGAGGCAAAGCTTCCACTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCA 5854 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 ||||| | | |||| | | | ||||| ||| |||| || || || | Sbjct 5853 CACGTTCTCCAAAGTTCGCCTTATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCT 5794 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGA 17231 ||| | || || |||||| ||||| || || | |||| | ||| | ||| Sbjct 5793 TCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACAGAAACTCTCTCTCCACTGTGTCCT 5734 Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 || ||||||| || || | |||||||||||| ||||||| |||||||| || |||| Sbjct 5733 GAATGTACGTATTAATCAGAATGCTGTACATTTCAGAGTGTACATTCTCCATAGCGATCT 5674 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTA 17351 |||| ||||| ||| | || || || | | || || ||| ||| |||||| | | Sbjct 5673 GAAACCCGTAGAAGAACCGAGCCTCGGTGACCTGCACCTCCTGACTGAACCGTTCCACCA 5614 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 || || ||||| || ||||| || || || ||||| || | | ||| |||||||| Sbjct 5613 AGTTCTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCAAGCACATGGGAAATGAAAT 5554 Query 17412 ATTTTTCGTCCGG-TGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 | || || || | | | ||| || | ||||| || | ||||| ||| Sbjct 5553 GCCTCTCACATGGCTGCATCTTCTC-CCAATCGGCCATGTCTTTAGACAAGTCCACCTCT 5495 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGT 17530 || ||||| || |||| | |||||||| || | | |||||| || ||||| || Sbjct 5494 TCCACAGTCCAGAAGGAAGCCTCAGCCTTTTTGTAAAAGTCCCAAATGTCTTTGTACTGA 5435 Query 17531 ATGGGGAATA 17540 || ||||||| Sbjct 5434 ATTGGGAATA 5425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517268156742480