Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq25027 241 1e-58 >seq25027 Length=9736 Score = 241 bits (266), Expect = 1e-58 Identities = 583/875 (67%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| |||| || || |||||||| || || || ||||| | || ||| | Sbjct 6291 TTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAACT 6232 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| |||| || ||||| | | || | || | | || | ||||| ||| | Sbjct 6231 CCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACT--CCCAGCTCCACTAG 6174 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA- 16088 | | || || |||||||| || || |||| | | ||| || || || || | Sbjct 6173 AAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGATCAT 6114 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 ||| ||| |||||||| | ||| || |||| ||||| || || || ||||| |||| Sbjct 6113 GTC-TACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGATGA 6055 Query 16149 TATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGA 16208 | || | |||| | | ||| | || | |||||| ||||| || || |||| Sbjct 6054 TTTCAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACATGAGGCAAGCGA 5995 Query 16209 AGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCA 16268 | || || || ||||||||||||| || ||||| ||||| || || || || |||| Sbjct 5994 AATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGGCA 5935 Query 16269 TTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACC 16326 || ||||||||||||| ||| || || | ||||| | | | ||||| | || || Sbjct 5934 TTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAA--AGATGCC 5877 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 || |||| ||||||||| || | ||||| | | | || | | | | ||||| Sbjct 5876 TTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTATCACTGGCGATCCA 5817 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 ||| |||| || || || | || | ||| || |||||| ||||| || |||| Sbjct 5816 ATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACAG 5757 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 |||| | ||| | || || ||||||| |||||| | ||||||||||| || Sbjct 5756 AAACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCTGTACATTTCAGA 5697 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 ||||| ||||| || || |||||||| || |||||| | |||||||| | | || || Sbjct 5696 GTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTCGGTGACCTGCAC 5637 Query 16567 TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 ||| || |||||| ||| |||||||||||| || |||||||| || |||||||| Sbjct 5636 CTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACTGGCTGCAAAAAA 5577 Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA---TATGCCAATCTTT 16683 || | | || |||||||| | ||| ||| | | | | |||||| Sbjct 5576 GGCAAGCACATGGGAAATGAAATGCCT---CTCACATGGCTGCATCTTCTCCCAATCGGC 5520 Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATA 16743 | ||||| || | ||||| ||||| ||||| ||| |||| | |||||||| || Sbjct 5519 CATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCAGCCTTTTTGTA 5460 Query 16744 CATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 | | |||||| || ||||| || || || |||| Sbjct 5459 AAAGTCCCAAATGTCTTTGTACTGAATTGGGAATA 5425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511140243525520