Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq368 185 6e-42 >seq368 Length=53407 Score = 185 bits (204), Expect = 6e-42 Identities = 304/435 (70%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||||||| | ||||| |||| | || || ||| | || ||||| | |||| ||| Sbjct 47120 TTAAACAGCCATTTCCATTTCAATTTTGGGATGAGGGCTGTAATTTTCGATGATAAAGTC 47061 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 ||| || ||| || ||||| || | ||| |||| | | || ||||| Sbjct 47060 ATCATATTGAAAATCTTCAATCTTCTCGACCTGTCTCTTAAATTTGAAAGTGGGAAATTC 47001 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 | | || |||| | | ||| ||| |||| |||||||| | ||||| ||| || Sbjct 47000 TTTGGGGGTTCTTTTGAGTTGCTCTTTTAGAGGTTCAATGTGGTTAGAATAGACGTGGGC 46941 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| | ||| |||| ||| ||||| || ||||| ||||| || || ||||| | Sbjct 46940 ATCTCCCAGAGTGTGGACAAAGTCTCCTGGTTTGAGATTGGTGACGTGGGCGATCATATA 46881 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 ||| | |||| ||| || || |||||||| || |||||||| ||||||||||| ||||| Sbjct 46880 AGTGAGGAGAGCATAACTGGCTATGTTAAAAGGAACTCCTAAGCCCATATCAGCAGATCT 46821 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG-ACTTAATACA-TGA 101890 |||||||| |||||| || | | |||| |||||||| || || | ||| || Sbjct 46820 TTGATACAATTGACAAGATAATTCCCCATTTGCCACATAAAACTGTAC--CAGACAGTGG 46763 Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950 ||||| || | ||||||| |||| || | ||||| ||| |||| | || ||| Sbjct 46762 CAAGGAGGAAGTGCCATTTTCGGAAGATCCGGTGGGTTCCAGGCAGACATAATAATTCTT 46703 Query 101951 CTATCTGTAGGGTTT 101965 | ||| || |||||| Sbjct 46702 CGATCAGTGGGGTTT 46688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361062383706386