Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq19288 138 1e-27 seq22640 109 5e-19 seq22871 86.0 5e-12 >seq19288 Length=6598 Score = 138 bits (152), Expect = 1e-27 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||||| || | |||||||||||| || ||||| ||||| | || Sbjct 4252 CCCCTC--AGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACA 4309 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 ||||| || ||||||||||||| ||||| || |||| | | |||||| || ||| | Sbjct 4310 GGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAA 4369 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 || |||||||| |||||| ||||| | ||| ||| || |||||| | Sbjct 4370 TTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACCT 4429 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | | ||| |||||||||||||| || || ||||| || || ||||| ||| Sbjct 4430 CAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCATCTTG 4479 >seq22640 Length=7414 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || ||||| ||||| | | Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| || || || |||| | || |||||||||| ||| Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGA 1353 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| || ||| ||||||| Sbjct 1354 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACC 1413 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | ||| || || || || |||| || || || || || |||||| Sbjct 1414 TCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 >seq22871 Length=9117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 29091 CGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGC 29150 ||||||| | ||||| |||| | | | | |||| ||| ||||| | |||||| || | Sbjct 5209 CGTACCACAGAGCGTGCTGCTCCAAAGCCACGTCATCGTCCTCCCAGTTCTTCAGTCCAC 5268 Query 29151 CGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGG 29210 || | |||| ||||||| || | |||| ||| ||||||||||||||||| || || | Sbjct 5269 CGCCACAGCTAAAGCACTGCACCCTGTCCCCCATTCCAGTGTAAAAGAATCCCGCATCCG 5328 Query 29211 CCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTC 29250 |||||| |||| | ||||| | ||||||||| Sbjct 5329 ACAACTCCCTGGGCTTCATCTTCAAATTGATGGGCCACTC 5368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422038496464376