Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq25027 340 2e-88 seq22640 134 1e-26 seq19288 127 2e-24 >seq25027 Length=9736 Score = 340 bits (376), Expect = 2e-88 Identities = 569/819 (69%), Gaps = 8/819 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| | |||||||||| ||||| || || ||| ||||| ||| | | ||| Sbjct 5403 GAGAACCCCAGGAGGTTCGTGATATTCCCAATTCAGTACAAAGACATTTGGGACTTTTAC 5462 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 |||||||| ||||| || |||||||| || || ||||||||| |||| || |||| | | Sbjct 5463 AAAAAGGCTGAGGCTTCCTTCTGGACTGTGGAAGAGGTGGACTTGTCTAAAGACATGGCC 5522 Query 116711 GACTGGGAGCGCTTGAACGACAAC-GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 || |||||| || | | || ||| | |||||||| || ||||| |||||||| Sbjct 5523 GATTGGGAGAAGATGCA-GCCATGTGAGAGGCATTTCATTTCCCATGTGCTTGCCTTTTT 5581 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 || ||||| ||||| || || || ||||| |||| || || ||| |||||||||||| Sbjct 5582 TGCAGCCAGTGACGGAATTGTGAATGAGAACTTGGTGGAACGGTTCAGTCAGGAGGTGCA 5641 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 ||| ||||||| |||| ||||||||| ||||||||||| |||||||| || ||||| || Sbjct 5642 GGTCACCGAGGCTCGGTTCTTCTACGGGTTTCAGATCGCTATGGAGAATGTACACTCTGA 5701 Query 116890 AATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGTTT 116946 |||||| | || || | |||||| | | | | ||||| || | | | Sbjct 5702 AATGTACAGCATTCTGATTAATACGTACATTCAGGACACAGTGGAGAGAGAGTT---TCT 5758 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 ||| |||||||| || ||| |||| || || || ||||||| || ||||| || || Sbjct 5759 GTTCAACGCCATTGAAACGCTGCCCTGTGTGAAGAAGAAGGCAGACTGGGCCTTGAATTG 5818 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||||||| | |||| ||| || || || || | || || || || || || || Sbjct 5819 GATCGCCAGTGATAAGGCGAACTTTGGAGAACGTGTGATTGCTTTTGCAGCTGTGGAAGG 5878 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||| || || || || ||| | || |||||||| |||||||| || || ||||| Sbjct 5879 CATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAAGAAACGAGGTCTAATGCC 5938 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 || |||| ||| ||| || || || || | ||||| || ||||| || || || || Sbjct 5939 TGGTTTGACCTTCTCCAATGAACTGATTTCACGAGACGAAGGACTGCACTGTGATTTCGC 5998 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 || | ||||||| || ||||||||| |||| || || | | || ||| | Sbjct 5999 TTGCCTCATGTTCAAACACTTGGTGCAGAAGCCGACAAAGGAACGAATTATTGAAATCAT 6058 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | || || || | ||| || ||| ||| | || || || || || || || | Sbjct 6059 CCGTGAAGCCGTGGTCATTGAACAGGAATTCTTGACAGACGCTCTTCCAGTAGACATGAT 6118 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || ||| || |||||| ||||| || || ||||| ||| | || || | Sbjct 6119 CGGCATGAACTGCAAACTGATGTCCTTTTACATTGAATTTGTCGCGGACCGTCTTCTAGT 6178 Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 ||||||| | || || |||||||||||| || || Sbjct 6179 GGAGCTGGGAGTCGAGAAAATCTACAACACGCCAAATCC 6217 >seq22640 Length=7414 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || ||||| ||||| |||||| |||| || || || | Sbjct 1461 AATGCAGATCTTCGTGAAGACCCTAACGGGGAAAACTATCACCCTCGAGGTGGAGCCCTC 1402 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || || | ||||| ||||| || ||| ||||||| Sbjct 1401 TGACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1342 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| || || |||||||| || | |||||||| ||||||||| Sbjct 1341 GCAGCGATTGATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 1282 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 1281 CATCCAGAAGGAGTCCACCCTCCA 1258 >seq19288 Length=6598 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | || ||||| ||||||||| | || ||||| || Sbjct 4478 AAGATGCAGATCTTCGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCC 4419 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | |||| || || | ||||| ||||| || ||| | || Sbjct 4418 TCCGACACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGAT 4359 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | || | ||| ||||| |||||||| |||| || ||||| ||||||| Sbjct 4358 CAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTAC 4299 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| |||| || || | ||| | || ||||||| || Sbjct 4298 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTGAGGGGAGG 4249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514943003867360