Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq368 192 4e-44 >seq368 Length=53407 Score = 192 bits (212), Expect = 4e-44 Identities = 306/434 (71%), Gaps = 4/434 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| ||||| || | || | |||| | || ||||| | |||| |||| Sbjct 47119 TAAACAGCCATTTCCATTTCAATTTTGGGATGAGGGCTGTAATTTTCGATGATAAAGTCA 47060 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | || |||||| ||||| | | || ||| ||| || | || |||||| | Sbjct 47059 TCATATTGAAAATCTTCAATCTTCTCGACCTGTCTCTTAAATTTGAAAGT-GGGAAATTC 47001 Query 97018 CT-GGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGC 97076 | ||| |||| | || |||||| | |||| |||||||| || ||| | ||| || Sbjct 47000 TTTGGGGGTTCTTTTGAGTTGCTCTTTTAGAGGTTCAATGTGGTTAGAATAGACGTGGGC 46941 Query 97077 ATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 |||||| | |||||| | ||| ||||| || | || ||||| |||||||||||| | Sbjct 46940 ATCTCCCAGAGTGTGGACAAAGTCTCCTGGTTTGAGATTGGTGACGTGGGCGATCATATA 46881 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 ||| | |||| ||| || || ||||||||||| || |||| ||||||||||| ||||| Sbjct 46880 AGTGAGGAGAGCATAACTGGCTATGTTAAAAGGAACTCCTAAGCCCATATCAGCAGATCT 46821 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA-TGAC 97255 |||||| || ||||| || | | |||| |||||||||||| | | ||| || | Sbjct 46820 TTGATACAATTGACAAGATAATTCCCCATTTGCCACATAAAACTG-TACCAGACAGTGGC 46762 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | || || | |||||||| |||| ||| ||||| ||| |||| | ||||||| Sbjct 46761 AAGGAGGAAGTGCCATTTTCGGAAGATCCGGTGGGTTCCAGGCAGACATAATAATTCTTC 46702 Query 97316 TATCGGTTGGGTTT 97329 ||| || |||||| Sbjct 46701 GATCAGTGGGGTTT 46688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 97354 TTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTA-AGACCTTGATATTCTGCTCC 97412 |||| |||||||| ||||| |||| | || |||| ||| || ||| ||||| ||||| Sbjct 46612 TTTAGTTGATCAATGCCTTGTCCATCGTAGTTGTCTTTACAGGTTTTG-TATTCAGCTCC 46554 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA 97472 |||||| | ||| ||||| || || ||||| || | || ||||| |||| |||| ||| Sbjct 46553 AAAATGTCGCCACTGGAAGCCGTAGACAGGCCCCAAATCACCTTCCTCTCGATCAGTGAA 46494 Query 97473 ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACC-AGATG 97531 || | | | || ||| | | | ||| |||||||||| ||| || | Sbjct 46493 TCCCATCATGTCCAAAAACTGTCGGTTGCTGTTTCCATCCCAAATCCTCACTCCTTTCTC 46434 Query 97532 CTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACAC 97591 ||| ||| | ||| || ||| |||| ||||||||| || | || || ||| | Sbjct 46433 CTG-GAGCACCTTGGCATCGGTACTGCCTCGGATAAACCATAATAGCTCCTCAGCAATGC 46375 Query 97592 CTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 ||| |||| || ||||| || ||||| ||||| || Sbjct 46374 CTCGGAAAAACACCCTCTTCGTGGTTAAAAGAGGGAA 46338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346602745323020