Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq35246 134 2e-26 seq368 102 1e-16 >seq35246 Length=3738 Score = 134 bits (148), Expect = 2e-26 Identities = 477/738 (65%), Gaps = 17/738 (2%) Strand=Plus/Minus Query 202934 AATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAA 202993 || || | |||||| || |||||| |||| || || || ||||||||||||| || Sbjct 2217 AAAGCCTGTTCTGGGCTTTCTGTCCACTCTAGAATCTTCTTTGCCCAATACATTCGCAAG 2158 Query 202994 TATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCA 203053 | || || ||||| || | | | || || |||| | ||||||||| |||| || Sbjct 2157 AAACCGTGAATTTTTCCCTCTTTTACCAACTGAATTTGGGCTGCATTCCACAAATCATCG 2098 Query 203054 TGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTA 203113 |||||| ||| | ||||| | | | | |||| || || | |||| || | Sbjct 2097 TGAGTTTTTGCCTCTTCAAACTCCTTTTTGGTGTATAAATATTCCCGTTTATCCTTCCTG 2038 Query 203114 TGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCA 203173 || || |||| || || | ||||||| || ||||| ||| |||| ||||||| | Sbjct 2037 TGATCGTTTAAGGTCTTCTTCGCCCAATCATATAAACCATCCATACTATCATAATTTTTA 1978 Query 203174 TTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACT 203233 || ||||| ||||||||||| | |||| |||| ||| |||||||| ||||| Sbjct 1977 TTGTAATAGCAAAAATTATCGGCCAATTCTCGTCGAACAATTGCTTCTTCGCAAAACGAA 1918 Query 203234 TCTACCGATTTAGGA-TATAATTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGT 203292 | | || ||| || | | |||| ||||| || | ||| | ||| ||||| Sbjct 1917 GC-AACGCTTTCCGAGTTTCGTTTTGGGTATTTCTTCACTTCAAGGATTGCCCTTTGGAC 1859 Query 203293 TGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATC 203352 | ||||| |||||||| | ||| || || | ||| | || || |||||| || Sbjct 1858 AGCGATTTGTCCAAAATGGAACCAGGGAGAGAGATTCGACAAAGCTTTTATATTTGGGTC 1799 Query 203353 ATTTCtttttttagcataatcttttaatctattttgtataaatatatctaatattttaaa 203412 |||||||| | | | | || || | ||||| | ||| ||||| | ||| || Sbjct 1798 GTTTCTTTTATCATTAAATGAATTCAAACGCTTTTGAAGAAACTCTTCTAAAACTTT-AA 1740 Query 203413 tgcatattttGT-ACCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTA 203471 ||| | ||| | ||||| ||| |||||| || | |||| | | || | | || Sbjct 1739 TGCCTGCTTTATAACCAGGTTTAGCCCAATCTACTTCATCAACAGTCATGTCTACCTCTA 1680 Query 203472 ATGATTGTTCT--GCttttttccaatt------attatttattttaatatatgtattata 203523 | || || | |||| | |||||| | | | ||| | || || || | Sbjct 1679 --GCTTATTATAAGCTTCCTCCCAATTGACGGAAGAAATCGTTTCAGTA---GTTTTTAA 1625 Query 203524 agtatgtttaataataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTT 203583 || |||||| | | || | |||| | ||||||| ||| || | ||| || || Sbjct 1624 AGGATGTTTTAGTAAAGCTGGGAATTTTTGGAGATATTCTCCTAAATTGTTATTGATCTT 1565 Query 203584 ATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAAT 203643 ||||||||| ||| | |||| || ||| ||||||| || | |||| || ||||| Sbjct 1564 ATTTCTAATAGTTCTAGCAGCGTACTCTTGTTTATTAGAGGCTACCCAAATCGGGACAAT 1505 Query 203644 ATTATGTGAATCAACTTG 203661 ||| || | ||| ||||| Sbjct 1504 ATTGTGAGCATCTACTTG 1487 >seq368 Length=53407 Score = 102 bits (112), Expect = 1e-16 Identities = 216/321 (67%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 205309 TCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttt 205368 || || ||||| || | ||| || | |||||| || || || | || | ||| | | Sbjct 47035 TCGACCTGTCTCTTAAATTTGAAAGTGGGAAATTCTTTGGGGGTTCTTTTGAGTTGCTCT 46976 Query 205369 tttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCA 205428 |||| | ||| || ||| ||| | || |||| || | | | || | ||| || Sbjct 46975 TTTAGAGGTTCAATGTGGTTAGAATAGACGTGGGCATCTCCCAGAGTGTGGACAAAGTCT 46916 Query 205429 TATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACA 205488 |||||| | ||| || | || || ||||||||||| | | | |||||| || | Sbjct 46915 CCTGGTTTGAGATTGGTGACGTGGGCGATCATATAAGTGAGGAGAGCATAACTGGCTATG 46856 Query 205489 TTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGAT-A 205547 ||||| || || ||||| ||||||||||| ||||||||||||| ||||| ||||| | Sbjct 46855 TTAAAAGGAACTCCTAAGCCCATATCAGCAGATCTTTGATACAATTGAC----AAGATAA 46800 Query 205548 TTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTC 205607 || ||| |||| ||| ||||| | ||| || ||||| || | |||| || Sbjct 46799 TTCCCCATTTGCCACATAAAACTGTACCAGACAGTGGCAAGGAGGAAGTGCCATTTTCGG 46740 Query 205608 AACATCTATAGGATTCCAGGC 205628 || ||| || |||||||| Sbjct 46739 AAGATCCGGTGGGTTCCAGGC 46719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755051018924800