Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq35246 136 7e-27 seq10184 84.2 4e-11 >seq35246 Length=3738 Score = 136 bits (150), Expect = 7e-27 Identities = 231/333 (69%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 189252 AAAACGTTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTT 189311 ||| ||||| ||||| || ||| |||||| || ||||| | | |||||||||| Sbjct 1908 AAAGCGTTGCTTCGTTTTGCGAAGAAGCAATTGTTCGACGAGAATTGGCCGATAATTTTT 1967 Query 189312 GTTACTATAACAAACATTATGATAGTATCCA--GTCTACTCATTCATGGGCCAGAAAAAC 189369 | || || || ||| ||||||||||||| | || || || ||||| | || || Sbjct 1968 GCTATTACAATAAAAATTATGATAGTATGGATGGTTTAT--ATGATTGGGCGAAGAAGAC 2025 Query 189370 ATTAGAAGATCACATTAATGATCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAA 189429 ||| | ||||||| || ||| | | ||| |||| ||| || | | ||| | Sbjct 2026 CTTAAACGATCACAGGAAGGATAAACGGGAATATTTATACACCAAAAAGGAGTTTGAAGA 2085 Query 189430 AGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAA 189489 || ||||||| ||| | | ||||| || | ||||| ||| |||| | ||| ||||| Sbjct 2086 GGCAAAAACTCACGATGATTTGTGGAATGCAGCCCAAATTCAGTTGGTAAAAGAGGGAAA 2145 Query 189490 AATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACC 189549 ||| || |||| || |||||||||||||| |||||||| || || ||||| || || Sbjct 2146 AATTCACGGTTTCTTGCGAATGTATTGGGCAAAGAAGATTCTAGAGTGGACAGAAAGCCC 2205 Query 189550 TGAAGACGCTTTGAGTTATAGTATCTATTTGAA 189582 ||| | |||||| || | ||||| ||||| Sbjct 2206 AGAACAGGCTTTGGAGTACGGAATCTACTTGAA 2238 >seq10184 Length=6202 Score = 84.2 bits (92), Expect = 4e-11 Identities = 186/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 135601 GATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTT 135660 ||| ||||||||||| | | |||| |||| | ||||| || || |||||||| || Sbjct 2817 GATGAAGACGAGTGGTCGAGTTGGATGAAAAGAGGTGATCCGGTGTTACATATAGACCTC 2758 Query 135661 AGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATA 135720 | | |||||||||| | | || ||||| || || |||||| | || || ||||| Sbjct 2757 ACCAAATGGGCGGATTTGATGATAATAGCCCCGTTGGATGCAAATTCTTTGGCCAAAATT 2698 Query 135721 GCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAA 135780 | || || || ||||| ||||| || | | || |||||||||| || Sbjct 2697 TCAAACGGGATTTGCGACAATTTTTTGCTTTGCACAGTTCGAGCCTGGGACTTGGGAAAG 2638 Query 135781 CCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAA 135840 ||||| | ||| ||| || ||||| || |||||||| ||||| || || | Sbjct 2637 CCACTTCTCTTCGCTCCCGCCATGAACACCAAAATGTGGGAGCATCCAATCACCAGCAGT 2578 Query 135841 CATATAGATACGTTAAAATATATGGGTTTCATAGAAATA 135879 || ||| | || | ||| | ||||| ||| |||||| Sbjct 2577 CAAATAAACACCCTTAAACAGTGGGGTTACATTGAAATA 2539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922701897275440