Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq19288 118 7e-22 seq22640 107 1e-18 >seq19288 Length=6598 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||||||||| ||| |||| Sbjct 4264 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCC 4323 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| |||||||| | |||||||| || ||| | | ||||||||| Sbjct 4324 TCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 4383 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | |||| | ||||| || | |||||||| Sbjct 4384 TGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTC 4443 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| | || || || |||||||||||| Sbjct 4444 TTGCCGGTCAATGTCTTGACGAAGATCTGCATC 4476 >seq22640 Length=7414 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| | || || ||||| ||||||||||||||| Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || |||||||| | ||||||||||| ||| Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGA 1353 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | |||| || | | || || Sbjct 1354 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACC 1413 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || || || ||||| ||||||||||| Sbjct 1414 TCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCAT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322903138948160