Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq25027 208 7e-49 >seq25027 Length=9736 Score = 208 bits (230), Expect = 7e-49 Identities = 576/875 (66%), Gaps = 6/875 (1%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| | ||||| ||||||| || |||| || |||||||| || || Sbjct 6310 TTGGACATGACTCCGAACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTC 6251 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG 16045 || || | || ||| ||||| |||| ||||||||| | ||| ||| ||| Sbjct 6250 CCCTCGAGCGAGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCG 6191 Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 ||||| |||| | | | ||||| |||||||| || || ||| | | Sbjct 6190 ACTCCCAGCTCCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTG 6131 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||| || || | | || || | || ||||| || || | | ||| || Sbjct 6130 CAGTTCATGCCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACC 6071 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTA 16225 || |||||| ||| || || | | | ||| ||| | | |||||||| Sbjct 6070 ACGGCTTCACGGATGATTTCAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTG 6011 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||| | ||||| |||||||| |||| ||||||||| | || | || || || Sbjct 6010 AACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAG 5951 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| |||||||| |||||||| || | |||||| |||| |||||| ||| Sbjct 5950 AAGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCA 5891 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || || || ||||| || || ||||| |||| || || || || | |||| || Sbjct 5890 CTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAA-GTTCGCCTT 5832 Query 16406 tt-actttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 | ||| | ||||| || ||||| | ||| || | || |||||| || | || Sbjct 5831 ATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTC 5772 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || || || || | | | | | | || | || ||| || |||| || || | Sbjct 5771 AATGGCGTTGAACAGAAACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAAT 5712 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 || |||||||| || || | ||||||||| || |||||||| || || ||| | | ||| Sbjct 5711 GCTGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGC 5652 Query 16585 TTCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 |||| | || || || || | || || ||| | ||||| || || || ||||| | Sbjct 5651 CTCGGTGACCTGCACCTCCTGACTGAA-CCGTTCCACCAAGTTCTCATTCACAATTCCGT 5593 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGT 16702 | || ||||||||||| ||||| | || ||| |||| | || | ||| | | Sbjct 5592 CACTGGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTCACATGGCTGCATCT 5533 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 | | ||| || | | ||||| || || || |||||||| |||||||| || ||||| Sbjct 5532 TCT-CCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCC 5474 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 |||||||||| || | | ||| ||||||| ||| Sbjct 5473 TCAGCCTTTTTGTAAAAGTCCCAAATGTCTTTGTA 5439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264058879600