Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq368 129 8e-25 >seq368 Length=53407 Score = 129 bits (142), Expect = 8e-25 Identities = 157/216 (73%), Gaps = 15/216 (7%) Strand=Plus/Plus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 ||| ||||||| || | | || ||||||||| |||| | | ||||||||||||||| Sbjct 46698 GATCGAAGAATTATTATGTCTGCCTGGAACCCACCGGATCTTCCGAAAATGGCACTTCCT 46757 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 ||||| || ||| | | ||| ||| |||| |||||| ||||| Sbjct 46758 CCTTGCCACTGTCTGGTACAGTTTTATGTGGC---------AAATGGG------GAATTA 46802 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 |||||||| || | |||||||||||| |||||||| || |||||||||||||||||||| Sbjct 46803 TCTTGTCAATTGTATCAAAGATCTGCTGATATGGGCTTAGGAGTTCCTTTTAACATAGCC 46862 Query 104710 AGTTATGCATTATTAACACATATAATAGCTCATGTC 104745 |||||||| | | || |||| || || || ||| Sbjct 46863 AGTTATGCTCTCCTCACTTATATGATCGCCCACGTC 46898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679449968495520