Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq25027 138 2e-27 seq368 123 5e-23 >seq25027 Length=9736 Score = 138 bits (152), Expect = 2e-27 Identities = 336/505 (67%), Gaps = 8/505 (2%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA--CGA--TTTGGCGGA 101910 |||||||||| | ||||| | |||||||| || |||| ||| ||||| | | Sbjct 5790 AAGAAGAAGGCAGACTGGGCCTTGAATTGGATCGCCAGTGATAAGGCGAACTTTGGAG-A 5848 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCAT 101970 || | |||| ||||| || || ||||| ||||| || ||||| || || || || Sbjct 5849 ACGTGTGATTGCTTTTGCAGCTGTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTAT 5908 Query 101971 TTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTC 102030 || ||| | ||||| | ||| | |||||||| | |||| ||||||||| | ||||| Sbjct 5909 CTTTTGGCTAAAGAAACGAGGTCTAATGCCTGGTTTGACCTTCTCCAATGAACTGATTTC 5968 Query 102031 TAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA 102090 | |||||||| || || | || || || ||| | |||| ||| | || || | Sbjct 5969 ACGAGACGAAGGACTGCACTGTGATTTCGCTTGCCTCATGTTCAAACAC---TTGGTGCA 6025 Query 102091 TACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150 | || ||| ||| | ||| ||||||| || ||||||||| |||||||| || Sbjct 6026 GAAGCCGACAAAGGAACGAATTATTGAAATCATCCGTGAAGCCGTGGTCATTGAACAGGA 6085 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 ||| | |||| | || || || | | | || ||||||||||| ||||| | Sbjct 6086 ATTCTTGACAGACGCTCTTCCAGTAGACATGATCGGCATGAACTGCAAACTGATGTCCTT 6145 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAA 102270 |||||||||||||| || || || | || || ||||| | || || ||| || Sbjct 6146 TTACATTGAATTTGTCGCGGACCGTCTTCTAGTGGAGCTGGGAGTCGAGAAAATCTACAA 6205 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 | || || ||| |||||||| ||| || |||||| ||||| || || || Sbjct 6206 CACGCCAAATCCTTTCAATTTCATGGAGTTTATCTCGCTCGAGGGGAAGACGAATTTCTT 6265 Query 102331 TGAAAAGAGAGTCGCCGAGTATCAA 102355 || |||| |||| || || ||| Sbjct 6266 CGAGAAGAAGGTCGGTGAATACCAA 6290 >seq368 Length=53407 Score = 123 bits (136), Expect = 5e-23 Identities = 200/284 (70%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 35518 AGAAAATCCAGA-TGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||||| || | |||| |||| || |||||| | || ||||| || |||||||| Sbjct 46684 AGAAAAACCCCACTGATCGAAGAATTATTATGTCTGCCTGGAACCCACCGGATCTTCCGA 46743 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCT-CAATTTTATGTGGCTAATGGAGAATTG 35635 ||||| |||||||| |||||| || ||| | || ||||||||||| ||||| ||||| Sbjct 46744 AAATGGCACTTCCTCCTTGCCAC-TGTCTGGTACAGTTTTATGTGGCAAATGGGGAATTA 46802 Query 35636 TCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCA 35695 || || || |||||||| || | ||| | || || || || || || || || || Sbjct 46803 TCTTGTCAATTGTATCAAAGATCTGCTGATATGGGCTTAGGAGTTCCTTTTAACATAGCC 46862 Query 35696 TCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTT 35755 || |||| || ||| || |||| ||| | ||| ||||| ||||| ||| Sbjct 46863 AGTTATGCTCTCCTCACTTATATGATCGCCCACGTCACCAATCTCAAACCAGGAGACTTT 46922 Query 35756 ATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGA 35799 ||| |||||| || || || ||| | ||| || ||||||||| Sbjct 46923 GTCCACACTCTGGGAGATGCCCACGTCTATTCTAACCACATTGA 46966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989040246476130