Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq25828 221 1e-52 seq25027 219 4e-52 seq35853 129 5e-25 seq11803 89.7 5e-13 >seq25828 Length=6072 Score = 221 bits (244), Expect = 1e-52 Identities = 620/937 (66%), Gaps = 20/937 (2%) Strand=Plus/Minus Query 37410 TTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATAT 37469 ||| || || | ||| || || | ||||| || ||||||||||| ||| || |||| Sbjct 5979 TTCACAGCTCGCTTCCAGGGCCCCGTAATAAATAGTTTCGAAAATCTGTTGGTTCAATAA 5920 Query 37470 TTTTGCTTCTTCGCTATCGAATG-CATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528 | || ||| |||| ||| | | ||| | || | || || | || ||||| |||| Sbjct 5919 CTGCGCCTCTGCGCTTTCGTAGGGCATT-CTCATCAGGATGAAGGCGTCTGCCAAGCCCT 5861 Query 37529 GAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGAT 37588 | ||||| || || || || | |||| || |||| ||| | || ||| || |||| Sbjct 5860 GGACACCAATTCCGATCGGACGATGTCTCATATTCGATGTTTTCGCCTCTGGTACGGGAT 5801 Query 37589 AATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCA 37648 ||||||||||||| || | ||||||||||| | | |||| || | | ||| Sbjct 5800 AATAATTGATATCAATCACCTTATTTAGATTCCTTGTCACCGTTTTGGTCACTTCCTTCA 5741 Query 37649 ACTTGTCGAACATAAATACGTTAT------TA--TTAACAAATTTACTCAACGAAATAGA 37700 | || | || || ||| | | || || ||||| | ||| | || || Sbjct 5740 ATTTCTTAAA-ATCG-TACTTCTTCTCAGCTACGTTCACAAACATGTTCAGGGCGATCGA 5683 Query 37701 TCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAG 37760 | | || ||||| ||||| || ||||||| | || ||| | ||||||||| || || Sbjct 5682 TGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTATTCCACAATCTCTGTGCACAG 5623 Query 37761 ATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTT 37820 |||||| ||| ||| || || | ||| |||||| ||| ||||||| | ||| || Sbjct 5622 ATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTATTACAGGCATCCTT 5563 Query 37821 ATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACT 37880 ||| || ||||| ||| |||| || | |||| |||||||| |||| | | | Sbjct 5562 ATAAAGCATATAAGGCATTCCAGTCTCCACTTGACTTGTGATAATAGCCATCCAAAGA-T 5504 Query 37881 TCT-TGCTTTAACGATCGCTTTA-AtttttttCTT-TGTTTCGTATTCTATATATAATTT 37937 || |||||| || | |||| || ||| ||| || || || | ||||| ||||| Sbjct 5503 CCTGTGCTTTGACCTTT--TTTACATATTTCCCTTCTGACTCATACTTCATATACAATTT 5446 Query 37938 GTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGA 37997 | ||| |||| ||||| ||| | ||||| || | ||| |||||||| | | Sbjct 5445 ATCAAATTCATCTCCCCAACAATCAAACAATCCAGGGGAATCGTCAGGACACATCAAGCA 5386 Query 37998 CCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAA 38057 |||||| ||| | ||| || | | ||| || || || || | ||| | || ||| Sbjct 5385 CCATTCGCCATTCTCTTCCACCCTCTTCATGAACAAGTCTGGAATCCAAAGAGCGTAAAA 5326 Query 38058 TAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAA 38117 ||||||| | | || | || ||| | ||| |||||| |||| | | ||||| || Sbjct 5325 TAAATCTCTAGCTCGTTCTTTTTCCTCTCCTGTATTCTTCTTTAAATTCAAGAAATCAAA 5266 Query 38118 TATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCC 38177 ||| || || ||||| || |||| |||||| | | || || |||||||| | || || Sbjct 5265 TATGTCGGCATGCCACGGCTCTAAATAAATGGCCCAGGCCCCGGGTCTTTTGTTTCCGCC 5206 Query 38178 CTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGA 38237 |||| | ||||| | |||||||||||| | | ||||| ||||| | |||| || Sbjct 5205 TTGATCCACATATCGGGCCATGTTATTATATAATTTCAACATTGGTACAAGGCCATCGGA 5146 Query 38238 TTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATC-GACAATC 38296 || ||||| |||| || || | ||||| ||||| || | | | | || | Sbjct 5145 GAATCCATTTATTCCGGCGATGTAGCTTCCCTTGGCTCGAAT-GCAGTGAACATTCACGC 5087 Query 38297 CTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 | |||||||| || |||||||| || || ||||| Sbjct 5086 CAATTCCACCCGCTGACTTTGATATCAATGCACATTG 5050 Score = 116 bits (128), Expect = 3e-21 Identities = 280/421 (67%), Gaps = 7/421 (2%) Strand=Plus/Minus Query 36931 TGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGAT 36990 ||||||||||| ||||| ||||||| || || ||||| | | | ||| | Sbjct 647 TGACTTTGATCAATAAAGGCACCTCGATCAGCAGCCATATTCATTGTTGCCTTTACACTG 588 Query 36991 ATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA---ATGTTGA 37047 || |||||||| ||||| || | | || | |||||| | |||| || |||| Sbjct 587 ATTTCCCAAACTGTTTTGTAAAGGGCTCGGATTTCATCTGGAATTTCTAGTATATTTTGA 528 Query 37048 ATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTT 37107 || || ||||| ||| | ||| | ||||| ||||||| |||||||| ||| | || Sbjct 527 ATGGATCCATTGTGTGCAATGATTTTGTTCTTCATGTCATCATTCCACAA--TTCCAGTT 470 Query 37108 A--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTC 37165 ||| ||| ||| | || |||| || ||||| || |||||||| || |||| | Sbjct 469 CGGTTAAGTCTTTCAGCAAATGACGATTCACCACCTGGAATTCTCCAGACAAAACTCGAC 410 Query 37166 TTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATG 37225 | || || || || || || |||| || || || || | | ||||||| || Sbjct 409 GATTGTAGATGTTCGACGTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTG 350 Query 37226 TAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTC 37285 | || || || |||||||| || | ||||| ||||||| || ||| | ||| Sbjct 349 TGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTT 290 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATT 37345 ||| ||| || ||| ||| | ||| ||||||||||| | || |||||| || || | Sbjct 289 TCTCTTTCAGCTCAGCCCAGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACT 230 Query 37346 G 37346 | Sbjct 229 G 229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 || ||||| |||||| |||| | ||| || | ||| || |||||||| | || Sbjct 4642 GTCGGAGAGGCATGTGTGAAATAACGTTCAGAAAGGAGATTGTAGGTTTCTATAGCGGCA 4583 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || || || ||||||||||||| | || |||||||| | ||| || ||||||||||| Sbjct 4582 TCAATGTCCTCGCCGTGAATACCAACAGCCACCCTCATCAACATGTGCTGTGGTCTTTCC 4523 Query 38551 ATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 || || || || | || ||||||| ||| |||||||| | |||||| ||| Sbjct 4522 GCTACCTTGCCTTTGATCTTCAATAAATACGATCGTTCCAATGTTTTAAATCCAAAGTAA 4463 Query 38611 CTATATGAATAATCTCTATCGTA 38633 | ||| | |||| | ||| || Sbjct 4462 TTGTATCCAAAATCACGATCATA 4440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || || |||| || || || || | | ||||||| ||| || || || |||||| Sbjct 224 GTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATT 165 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | ||||| ||||||| || ||| | ||| ||| ||| || ||| | Sbjct 164 GGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCC 105 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || | ||| ||||||||||| | || |||||| || || || |||||||| ||||| Sbjct 104 CAGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACTGCAGAATACCCTTACTT 45 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCC 37394 | ||| | | | || ||||| | |||||| Sbjct 44 ACCGGACATCCTTGGTAAGTCTCGT-AGGTCC 14 >seq25027 Length=9736 Score = 219 bits (242), Expect = 4e-52 Identities = 593/896 (66%), Gaps = 21/896 (2%) Strand=Plus/Minus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAG 11388 || || | |||||| ||||||| || | || | ||||| ||||| ||||| || || || Sbjct 6301 ACTCCGAACTTTTGGTATTCACCGAC-CTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAG 6243 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 || ||| ||||||| || | |||||||| ||| ||| ||| || || | Sbjct 6242 CGAGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCCCAG 6183 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 ||| || | | || ||||| ||||| || || ||||| | || ||||| Sbjct 6182 CTCCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCAT 6123 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || | || || |||| ||| ||||||| || |||| ||| || || || || Sbjct 6122 GCCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTC 6063 Query 11569 A---ATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 | |||||| || | | || |||||| | || || | || ||||| ||||| Sbjct 6062 ACGGATGATT-TCAA--TAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACAT 6006 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 | || || |||||||| || | |||||||||| || |||||||| || || || Sbjct 6005 GAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGT 5946 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 || || ||||| | |||||||| |||| |||||| |||| ||||| ||| || Sbjct 5945 CAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAA 5886 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCTTGTTGCT 11802 || || || |||||||||||||| || | || | ||||||| | |||| | || Sbjct 5885 AAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTATCACT 5826 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | ||||| || |||||| || || ||||| || || || || ||||| || || Sbjct 5825 GGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGC 5766 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAAT----AAAC 11918 ||| || | | | | | ||| | | | || | ||||| ||||||| | | Sbjct 5765 GTTGAACAGA--AACTCTCTCTCCACTGTGTCCT--GAATGTACGTATTAATCAGAATGC 5710 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 | |||||||| || || | ||| |||||||| || ||||| || ||||| | || |||| Sbjct 5709 TGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCT 5650 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | ||| || ||| | || | |||| | || |||||||| ||||| || |||| Sbjct 5649 CGGTGACCTGCACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCAC 5590 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT-TTA 12097 | | ||||||||| || || | ||| || || | | || | | | || || Sbjct 5589 TGGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTC-ACATGGCTGCATCTTC 5531 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 |||||||| | | ||||| || || || || ||||| || ||||| || ||| | Sbjct 5530 TCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCA 5471 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 | | ||| || | | ||| || || | |||| ||| ||||| || |||||||| Sbjct 5470 GCCTTTTTGTAAAAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAACCT 5415 >seq35853 Length=3953 Score = 129 bits (142), Expect = 5e-25 Identities = 353/538 (66%), Gaps = 7/538 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| || | ||| || | ||| |||| | |||||||||||| || Sbjct 3366 TCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCCCGTC 3425 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||| | ||||||| || || || || || || ||| |||| | || | Sbjct 3426 TTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGGTGCA 3485 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | || | | || || |||||||| ||||| || |||| || || ||||| Sbjct 3486 GCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGCCATG 3545 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | || |||| | || ||||| || |||||||| | | || | || Sbjct 3546 TTGATTGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGTCTTCA 3605 Query 37030 GG---TAAATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | |||| || |||||| || ||||| ||| | ||| | ||||| |||||| Sbjct 3606 GGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCATGTCA 3665 Query 37087 TTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | ||||||| | ||| | || | | ||| ||| | || |||| || ||||| | Sbjct 3666 TCATTCCAC--AATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACCTGGA 3723 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || || ||||| |||| || | || || ||| || || || |||| || || | Sbjct 3724 ATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGATTCGT 3783 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | || | | ||||||| ||| || || || |||||||| || | ||||| |||| Sbjct 3784 TGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAGTTTC 3843 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 ||| || ||| | ||| ||| ||| || ||| ||| | ||| ||||||||||| Sbjct 3844 TCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCACAAATCTGTTGG 3901 >seq11803 Length=6467 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38431 GTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCA 38490 || ||||| |||||| |||| | ||| || | ||| || |||||||| | || Sbjct 5398 GTCGGAGAGGCATGTGTGAAATAACGTTCAGAAAGGAGATTGTAGGTTTCTATAGCGGCA 5339 Query 38491 TCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || || || ||||||||||||| | || |||||||| | ||| |||||||||||||| Sbjct 5338 TCAATGTCCTCGCCGTGAATACCAACAGCCACCCTCATCAACATGTGTTGTGGTCTTTCC 5279 Query 38551 ATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | || || || | || ||||||| ||| |||||||| | |||||| ||| Sbjct 5278 GCCACCTTGCCTTTGATCTTCAATAAATACGATCGTTCCAATGTTTTAAATCCAAAGTAA 5219 Query 38611 CTATATGAATAATCTCTATCGT 38632 | ||| | |||| | ||||| Sbjct 5218 TTGTATTCAAAATCACGATCGT 5197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468273635567840