Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19288 102 8e-17 seq35853 82.4 8e-11 >seq19288 Length=6598 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || || | ||| || Sbjct 4267 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCC 4326 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| | |||| ||| |||||||| || || || || || ||||| | Sbjct 4327 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 4386 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||||| |||||| ||||||| ||| | |||||| Sbjct 4387 ATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 4446 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || || ||||| || ||||| Sbjct 4447 CCGGTCAATGTCTTGACGAAGATCTGCAT 4475 >seq35853 Length=3953 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 152760 AAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATC 152819 ||||||||||| |||||||| || || ||| ||| || || | ||| | ||| | | | Sbjct 514 AAATAGTACATTCCCGTCTTCAGTCCCAGTTTCCAACCATAGAAGTGAATCGAAGTTAGC 455 Query 152820 TTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCG 152879 || | || | || | || | || | |||||| || || |||||||||||||| || Sbjct 454 TTTCCGTAATTCGGTGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCT 395 Query 152880 CCTCTATCTGCTGCCATGTCGAT 152902 |||| ||| || ||||||| ||| Sbjct 394 CCTCGATCAGCAGCCATGTTGAT 372 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 152753 CGTACGAAAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGA 152812 ||| || ||||| ||||| |||||||| || || ||| ||| || || | ||| | ||| Sbjct 3401 CGTTCGTAAATAATACATTCCCGTCTTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGA 3460 Query 152813 CGCCATCTTAGCCAAAGTAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAAT 152872 | | ||| | || | || | || | || | |||||| || || ||||||||||| Sbjct 3461 AGTTAGCTTTCCGTAATTCGGTGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAAT 3520 Query 152873 AAATGCGCCTCTATCTGCTGCCATGTCGAT 152902 ||| || |||| ||| || ||||||| ||| Sbjct 3521 AAAGGCTCCTCGATCAGCAGCCATGTTGAT 3550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495798072491200