Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq25027 161 1e-34 >seq25027 Length=9736 Score = 161 bits (178), Expect = 1e-34 Identities = 395/586 (67%), Gaps = 16/586 (3%) Strand=Plus/Minus Query 13857 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13916 ||||| || || | || || |||||||| || || || || |||| ||| ||||| Sbjct 6016 TGTTTGAACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCA 5957 Query 13917 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA- 13975 || || || || || || ||||| | |||||||| |||| |||||| || | ||||| Sbjct 5956 TTGGAGAAGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAG 5897 Query 13976 -TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14034 | | | ||||| | || || || || || ||||| || || | ||||||||||| Sbjct 5896 CTTCCACTGAAAA--AGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGT 5839 Query 14035 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA 14094 || || | | | ||||| || ||||| || | || || || | | | || Sbjct 5838 TCGCCTTATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCA 5779 Query 14095 TTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGT-ACTTGAAATGTATGTATCA 14153 |||||||| || || || | | | || |||| || | || |||||| |||| | Sbjct 5778 GCGTTTCAATGGCGTTGAACAGAAACTCTCTCTCCACTGTGTCCTG-AATGTACGTATTA 5720 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 || || | ||| |||||||||||||||| || |||||||| |||||||| || || ||| Sbjct 5719 ATCAGAATGCTGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAG 5660 Query 14214 CATCTAGCTTC--CGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 | | ||| || |||| || || ||| || | || | ||| |||| || ||||| Sbjct 5659 AACCGAGCCTCGGTGACC--TGCACCTCCTGACT-GAACCGTTCCACCAAGTTCTCATTC 5603 Query 14271 ACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT-TC 14329 || || || ||||| ||||||||||| || | | | ||| || || |||| | Sbjct 5602 ACAATTCCGTCACTGGCTGCAAAAAAGGCAAGCACATGGGAAATGAA--ATGCCTCTCAC 5545 Query 14330 ATTGTTG-AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14388 || | || | || | |||||||| | || ||||| | || || || || || |||| Sbjct 5544 ATGGCTGCATCTTCTCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCC 5485 Query 14389 AAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14434 | || ||| |||| ||||| || | |||| || ||||| || Sbjct 5484 AGAAGGAAGCCTCAGCCTTTTTGTAAAAGTCCCAAATGTCTTTGTA 5439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479470829812400