Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq25027 167 2e-36 >seq25027 Length=9736 Score = 167 bits (184), Expect = 2e-36 Identities = 394/584 (67%), Gaps = 12/584 (2%) Strand=Plus/Minus Query 13645 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13704 ||||| || || | || || |||||||| || || || || |||| ||| ||||| Sbjct 6016 TGTTTGAACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCA 5957 Query 13705 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 13764 || || || || || || ||||| | |||||||| |||| |||||| || | || || Sbjct 5956 TTGGAGAAGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAG 5897 Query 13765 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 ||| || || || || || || || ||||| || || | ||||||||||| Sbjct 5896 CTTCCACTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTC 5837 Query 13825 GCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 13884 || || | | | ||||| || ||||| || | || || || | | | || Sbjct 5836 GCCTTATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGC 5777 Query 13885 GTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGT-ACTTGAAATGTATGTATCAAT 13943 ||||| || || ||||| | | || |||| || | || |||||| |||| ||| Sbjct 5776 GTTTCAATGGCGTTGAACAGAAACTCTCTCTCCACTGTGTCCTG-AATGTACGTATTAAT 5718 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 || | ||| |||||||||||||||| || || ||||| |||||||| || || || | Sbjct 5717 CAGAATGCTGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAA 5658 Query 14004 TCTAGCTTC--TGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 | ||| || ||||| || |||||| || | || | ||| ||||||| ||||| || Sbjct 5657 CCGAGCCTCGGTGACC--TGCACCTCCTGACT-GAACCGTTCCACCAAGTTCTCATTCAC 5601 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT-TCAT 14119 ||| || ||||| ||||||||||| || | | | ||| || || |||| ||| Sbjct 5600 AATTCCGTCACTGGCTGCAAAAAAGGCAAGCACATGGGAAATGAA--ATGCCTCTCACAT 5543 Query 14120 TGTTG-AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14178 | || | || | ||||||||| | || ||||| | || || || || || ||||| Sbjct 5542 GGCTGCATCTTCTCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAG 5483 Query 14179 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATA 14222 || ||| |||| ||||| || | |||| || ||||| || Sbjct 5482 AAGGAAGCCTCAGCCTTTTTGTAAAAGTCCCAAATGTCTTTGTA 5439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478332240509040