Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq25027 174 2e-38 seq25828 118 2e-21 seq34446 114 2e-20 seq36370 98.7 1e-15 seq11803 98.7 1e-15 seq35853 95.1 2e-14 >seq25027 Length=9736 Score = 174 bits (192), Expect = 2e-38 Identities = 579/888 (65%), Gaps = 37/888 (4%) Strand=Plus/Plus Query 124999 TTCCCA--TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 |||||| |||| || | ||||||||||| | |||||||||||| |||| ||||| || Sbjct 5427 TTCCCAATTCAG-TACAAAGACATTTGGGACTTTTACAAAAAGGCTGAGGCTTCCTTCTG 5485 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGA 125116 ||| || |||||||| || |||| || ||| || ||||||||||| || || Sbjct 5486 GACTGTGGAAGAGGTGGACTTGTCTAAAGACATGGCCGATTGGGAGAA------GA-TGC 5538 Query 125117 AACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | | | ||||| || || || || | | ||||| ||||| | | || |||| Sbjct 5539 AGCCATGTGAGAGGCATTTCATTTCCCATGTGCTTGCCTTTTTTGCAGCCAGTGACGGAA 5598 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT 125232 | || || || || || || ||| ||| ||| ||| || | | |||| || Sbjct 5599 TTGTGAATGAGAACTTGGTGGAACGGTTCAGTCAGGAGGTGCAGGTCACCGAGGCTCGGT 5658 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 ||| ||||| || || ||| || ||||| || ||||| ||||||||| | |||| Sbjct 5659 TCTTCTACGGGTTTCAGATCGCTATGGAGAATGTACACTCTGAAATGTACAGCATTCTGA 5718 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACA--TGCTCTTTAACGCAATCGACAC 125350 || | | |||||||| || | || | | | | | | || || ||||| || || || Sbjct 5719 TTAATACGTACATTCAGGA--CACAGTGGAGAGAGAGTTTCTGTTCAACGCCATTGAAAC 5776 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGG---TGATTCGGTGGATCGATGACGACAA 125407 | |||| | | | || ||||| | |||| ||| | ||||||| || || Sbjct 5777 GCTGCCCTGTGTGAAGAAGAAGGCAGACTGGGCCTTGAAT---TGGATCGCCAGTGATAA 5833 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 | | | | || | || | || || || || || || |||||||| || || Sbjct 5834 GGCGAACTTTGGAGAACGTGTGATTGCTTTTGCAGCTGTGGAAGGCATCTTTTTCAGTGG 5893 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 || ||||| | ||||||||||| ||||| || || || ||||| || |||| | Sbjct 5894 AAGCTTTGCCTCTATCTTTTGGCTAAAGAAACGAGGTCTAATGCCTGGTTTGACCTTCTC 5953 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 || || | || || |||||||| || || |||||||| || || || |||| Sbjct 5954 CAATGAACTGATTTCACGAGACGAAGGACTGCACTGTGATTTCGCTTGCCTCATGTT--- 6010 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 ||| | || || | || || || || | ||| | || | || | || Sbjct 6011 CAAACACTTG-GTGCAGAA-GCCGACAAAGGAACGAA----TTATTGAAATCATCCGTGA 6064 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 |||||| || ||||| || || | || || | || || || |||||| ||||| Sbjct 6065 AGCCGTGGTCATTGAACAGGAATTCTTGACAGACGCTCTTCCAGTAGACATGATCGGCAT 6124 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 ||||||||| || |||| | ||||| || ||||| || || ||||| || ||| | Sbjct 6125 GAACTGCAAACTGATGTCCTTTTACATTGAATTTGTCGCGGACCGTCTTCTAGTGGAGCT 6184 Query 125768 GATTGGCCGCAAGATTTACA--ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | | | || || |||| |||||| ||||| || |||||||| || || Sbjct 6185 GGGAGTCGAGAAAATCTACAACACGCCA--AATCCTTTCAATTTCATGGAGTTTATCTCG 6242 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 || ||||| ||||| || || ||||||||||||||| | || ||| || Sbjct 6243 CTCGAGGGGAAGACGAATTTCTTCGAGAAGAAGGTCGGTGAATACCAA 6290 >seq25828 Length=6072 Score = 118 bits (130), Expect = 2e-21 Identities = 359/555 (65%), Gaps = 0/555 (0%) Strand=Plus/Plus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGG 96883 |||||| || |||||| | | | | || ||| ||| | ||||| || || ||||| Sbjct 5151 TGGCCTTGTACCAATGTTGAAATTATATAATAACATGGCCCGATATGTGGATCAAGGCGG 5210 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 || ||| | || || || ||| | || || || || ||||| || ||| | ||||| Sbjct 5211 AAACAAAAGACCCGGGGCCTGGGCCATTTATTTAGAGCCGTGGCATGCCGACATATTTGA 5270 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 || | | | || || | || ||| | | |||||| || || || ||||| Sbjct 5271 TTTCTTGAATTTAAAGAAGAATACAGGAGAGGAAAAAGAACGAGCTAGAGATTTATTTTA 5330 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCT 97063 || || ||| | ||||| |||||||||||| | || | || |||| | ||| || | Sbjct 5331 CGCTCTTTGGATTCCAGACTTGTTCATGAAGAGGGTGGAAGAGAATGGCGAATGGTGCTT 5390 Query 97064 AATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAA 97123 ||||| || ||| || || || ||| ||||| ||||| || || ||||| Sbjct 5391 GATGTGTCCTGACGATTCCCCTGGATTGTTTGATTGTTGGGGAGATGAATTTGATAAATT 5450 Query 97124 GTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTG 97183 ||| | | || ||| ||| || ||| || | | ||| | |||| || || || Sbjct 5451 GTATATGAAGTATGAGTCAGAAGGGAAATATGTAAAAAAGGTCAAAGCACAGGATCTTTG 5510 Query 97184 GAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATAC 97243 || ||| || | || ||| || |||||||||| || || || || || |||||| | Sbjct 5511 GATGGCTATTATCACAAGTCAAGTGGAGACTGGAATGCCTTATATGCTTTATAAGGATGC 5570 Query 97244 CGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCAC 97303 | ||| | || ||||| || | | | ||||| || || ||||||||||| Sbjct 5571 CTGTAATAGAAAGAGCAATCAGCAGAATATCGGCACTATTCGATGCAGTAATCTGTGCAC 5630 Query 97304 GGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAA 97363 || ||||| || ||| ||| || ||| ||| || || ||||||||| || Sbjct 5631 AGAGATTGTGGAATACAGCTCCAAAGATGAGGTGGCTGTCTGTAACCTGGCATCGATCGC 5690 Query 97364 TCTGCCCAAGTTTGT 97378 ||| || |||||| Sbjct 5691 CCTGAACATGTTTGT 5705 >seq34446 Length=3428 Score = 114 bits (126), Expect = 2e-20 Identities = 255/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 126703 TCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCG 126762 || |||||| ||||| | || | ||| |||| ||||| || || |||| || || Sbjct 1597 TCCATGTCAGACTCTACCAGTCCTCTGGTGGTCAAAGCAGGCGTTCCTAGTCGAATTCCA 1656 Query 126763 CTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCAC 126822 || || | ||||| |||||||||||| || || ||||| || ||||| || | Sbjct 1657 CTCGGGTTCAGAGCTGACTTGTCTCCGGGAACGGTATTTTTATTACAAGCAATCGAAATC 1716 Query 126823 AGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGA 126882 ||| | ||| ||| ||| ||||| | |||||||||||||| | |||| ||| Sbjct 1717 TCTTCCAAAATGTACTCAGCCTTGGCTCCAGTAAGTCCCACACTGCGAAGGTCCATCAGA 1776 Query 126883 ATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCT 126942 | || || | ||||| || || || | || |||| || |||| | ||| | Sbjct 1777 AGGAGGTGGATGTCGGTTCCTCCCGTTGCCACATTGTATCCCTTCGAAATCAATCCTTGG 1836 Query 126943 GCCAACAACTGTGCATTTCGCACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTG 127002 || || ||||| ||||||| || |||| ||| | ||| || | | | Sbjct 1837 CACAGTTTTTGGGCATTCTTCACCACTTGTTTTTGATAGTCTTTAAATTCAGGGGATTTT 1896 Query 127003 GCCTGGTGCATTGCGGTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGG 127062 | ||| |||| || || || || | ||||||| |||||| || ||||| |||||||| Sbjct 1897 GACTGAAGCATCGCCGTTGCTATTCCCGCAATCGCGTGATTATGGGGTCCTCCTTGCAGC 1956 Query 127063 CCAGGAAACACGGCTCGTTCAAT 127085 ||||| || |||||| | | ||| Sbjct 1957 CCAGGGAAGACGGCTTGGTTAAT 1979 >seq36370 Length=18529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 271/410 (66%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 96912 TACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGC 96971 ||| |||||||||||||||| ||| ||| ||| || || | || ||||| | || Sbjct 17862 TACATGGAACCTTGGCACGCCGACATTTATGATTTCCTCAATTTGAAGAAAAATACCGGA 17921 Query 96972 TTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG 97031 ||||| |||||| || |||| ||||| | ||| | |||||| |||||||| Sbjct 17922 AAGGAAGAATACAGAGCCAAAGATTTGTGCTATGCTTTGTGGATCCCAGATCTGTTCATG 17981 Query 97032 AAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTG 97091 ||||| || | || ||| | ||| | | ||||||||| || || ||||| | Sbjct 17982 AAGCGAGTGGAAGAGAATGGAGAATGGTGTTTGATGTGCCCCCACGACTCTCCCGGATTA 18041 Query 97092 TCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA 97151 | |||||||||||| ||| ||||||| |||| | ||| || ||||| | Sbjct 18042 TTCGATTGCTGGGGAGAAAAGTTTGAAAAACTGTACTTGAGCTATGAATCGGAGGGAAGG 18101 Query 97152 TA-CGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGGCTCAGGTAG 97209 || | ||| || || | |||| || |||||| ||| ||||| || | ||| || | Sbjct 18102 TATAATAAGAAGA-TCAAAGCACAGGATTTGTGGATGGCTATCGTAGAAAG-TCAAGTGG 18159 Query 97210 AGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCC 97269 | ||||||| || | || || ||||| || | || || || ||||| |||| Sbjct 18160 AAACTGGAATGCCATTTATGCTATACAAAGACATTTGCAACCGGAAGAGCAATCAACAGA 18219 Query 97270 ACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || | || || || | || ||||| || | || ||||| ||||| Sbjct 18220 ACATCGGTACTATTCGGTGCAGTAATCTAAGCTCCGAGATTGTGCAGTAC 18269 >seq11803 Length=6467 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || ||||| || ||| | || ||||| || || ||| ||||||| ||||| || ||| Sbjct 6041 CAAGGCGGGAACAAAAGACCCGGCGCATGGGCAGTTTACGTGGAACCGTGGCATGCAGAC 6100 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 ||||||| ||| | | || ||||| | || ||||| || ||||| || Sbjct 6101 ATTTTTGATTTTCTGAACCTGAAGAAAAATACGGGAAAGGAAGAATATCGCGCCAGAGAT 6160 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||||||| || || ||| | ||||| |||||||||||| | || | || ||| | Sbjct 6161 TTGTTTTACGCCCTATGGATTCCAGACTTGTTCATGAAGAGGGTAGAAGAGAATGGTGAT 6220 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || | |||||||| || || || || ||| ||||| ||||| || || ||| Sbjct 6221 TGGTGCTTGATGTGCCCTAACGATTCCCCTGGATTGTTTGATTGTTGGGGAGATGAATTT 6280 Query 97116 GA 97117 || Sbjct 6281 GA 6282 >seq35853 Length=3953 Score = 95.1 bits (104), Expect = 2e-14 Identities = 279/422 (66%), Gaps = 10/422 (2%) Strand=Plus/Plus Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 ||||| ||||| || | |||||| ||||| ||| | | || ||||||||| ||| Sbjct 141 GAATCGTTTGAGCCTTACACGTCGAACATCTACAATCGTCGAGTTTTGTCTGGAGAATTT 200 Query 97905 CAATTGACCAA-CGTGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTGGAACGA 97960 ||| || || ||| || ||| | ||||||| |||| | ||| ||||||| || Sbjct 201 CAAGTGGTGAATCGT-CATTTGCTGAAAGACTTGACCGAACTGG--AAT-TGTGGAATGA 256 Query 97961 TGACATGGCCCAGTTGATCATGTACA-ACAATGGGTCCATTCAAAACATTACCATCATCC 98019 ||||||| | ||||| | || ||||||| ||||||||||| || || | Sbjct 257 TGACATGAAGAACAAAATCAT-TGCACACAATGGATCCATTCAAAATATAGAGGAAATTC 315 Query 98020 CGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCG 98079 | ||||| | || | || || ||||| ||||| ||| || || ||| Sbjct 316 CTGAAGACATTCGAGCTCTTTATAAAACTGTGTGGGAAATTAGTGTAAAAACTACCATCA 375 Query 98080 ATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTG 98139 | |||||||| || |||| | || ||||| || || || || || || | |||| | Sbjct 376 ACATGGCTGCTGATCGAGGAGCCTTTATTGATCAAAGCCAGTCTTTTAACATTCACGTCG 435 Query 98140 CCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCA 98199 | | || | ||| | | |||||||| ||||| || | ||||| ||| || | Sbjct 436 CTGCACCGAATTACGGAAAGCTAACTTCGATTCACTTCTATGGTTGGAAACTGGGACTGA 495 Query 98200 AGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGG 98259 ||||||| ||||||||| | || | || | | || ||||| || | |||||| || | Sbjct 496 AGACGGGAATGTACTATTTAAGGATAAGGCCTGCAGTGAATGCGATTCAATTTACAGTCG 555 Query 98260 AC 98261 || Sbjct 556 AC 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740661936689360