Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq25027 187 2e-42 >seq25027 Length=9736 Score = 187 bits (206), Expect = 2e-42 Identities = 598/915 (65%), Gaps = 12/915 (1%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| ||||| | || | || || || || || || || || || | ||| ||| Sbjct 6292 TTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAAC 6233 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGTAA 12978 ||||| |||| |||||||||| || ||| ||||| | || || | || | || Sbjct 6232 TCCATGAAATTGAAAGGATTTGGCGTGTTGTAG-ATTTTCTCGACTCCCAGCTCCACTAG 6174 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | | ||| || ||||| || ||||| ||| | | |||||||| || || | Sbjct 6173 AAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGATCAT 6114 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| || | ||| ||||| || || | | ||| || | || ||||| | || Sbjct 6113 GTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGATGAT 6054 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATT-TGATAGA--TGCTTAAACATCATACATGC 13155 || | ||| ||||| | || || || || | || || ||||| | || || Sbjct 6053 TTCAATAATT-CGTTCCTT--TGTCGGCTTCTGCACCAAGTGTTTGAACATGAGGCAAGC 5997 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||||||||||||| |||||| |||| || || || || || || || | ||| || Sbjct 5996 GAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGG 5937 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| || |||||||| || | |||||| |||| ||||| || ||||| || || Sbjct 5936 CATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAAAGATGCC 5877 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||| || |||||||| || |||| | ||| ||| | | || | ||| | ||||| Sbjct 5876 TTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTATCACTGGCGATCCA 5817 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 || |||||||| ||| || | || || ||| || |||| || ||||| || | Sbjct 5816 ATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACAG 5757 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | | | | ||| |||| ||| || |||| |||| | ||| |||||||| || Sbjct 5756 AAACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCTGTACATTTCAGA 5697 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG-AA 13514 || | ||| ||||| || || || || || || || | | |||||| | ||||| | Sbjct 5696 GTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTCGGTGACCTGCAC 5637 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 || | || | || | ||| | ||||| || || || || |||||||| || ||||||| Sbjct 5636 CTCCTGACT-GAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACTGGCTGCAAAAA 5578 Query 13575 aaGCAAGTATGTGCTTAAT-AAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGA 13633 | ||||| | || ||| |||| | | | ||| || ||| |||||| | Sbjct 5577 AGGCAAGCACATGGGAAATGAAATGCCTCTCACATGGCTG-CATCTTCTCCCAATCGGCC 5519 Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATAC 13693 | ||||| || || || ||||| || || ||||| || ||||| ||||||| || || Sbjct 5518 ATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCAGCCTTTTTGTAA 5459 Query 13694 ATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTTCCAGTTGTCTGTCTT 13753 | ||| || || || || ||| || || | ||| | || | | ||| | | Sbjct 5458 AAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAACCTCCTGGGGTTCTCTTTC 5399 Query 13754 AAAATCGGTTCACTG 13768 |||| ||||||| || Sbjct 5398 AAAAGCGGTTCAATG 5384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430757137082172