Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25027 176 1e-38 seq35246 109 1e-18 >seq25027 Length=9736 Score = 176 bits (194), Expect = 1e-38 Identities = 414/620 (67%), Gaps = 15/620 (2%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 ||||||||||| | | ||||| || || |||||||| ||||| ||| | || Sbjct 5388 GAACCGCTTTTGAAAGAGAACCCCAGGAGGTTCGTGATATTCCCAATTCAGTACAAAGAC 5447 Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| | |||||| |||| | ||||| || |||||||| ||||| || || || Sbjct 5448 ATTTGGGACTTTTACAAAAAGGCTGAGGCTTCCTTCTGGACTGTGGAAGAGGTGGACTTG 5507 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTAT 268852 ||| | ||| | |||||| | || | | ||| || || || || || || Sbjct 5508 TCTAAAGACATGGCCGATTGGGAGAAGATGCAGCCATGTGAGAGGCATTTCATTTCCCAT 5567 Query 268853 ATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTC 268912 | ||||| |||||||||| ||||| || || || || || || | || || |||| Sbjct 5568 GTGCTTGCCTTTTTTGCAGCCAGTGACGGAATTGTGAATGAGAACTTGGTGGAACGGTTC 5627 Query 268913 TGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAA 268972 |||| ||||| ||| | | || || | | || ||||| || ||||| ||||| || Sbjct 5628 AGTCAGGAGGTGCAGGTCACCGAGGCTCGGTTCTTCTACGGGTTTCAGATCGCTATGGAG 5687 Query 268973 AATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAA 269032 ||| | || || || |||||||| | | || |||| || || | || ||| | | Sbjct 5688 AATGTACACTCTGAAATGTACAGCATTCTGATTAATACGTACATTCAGGA-CACAGTGGA 5746 Query 269033 AAGAAAAGACTATTTTCTTCTA------TGAGAACTATGGACTGTGTGAGaaaaaaaTCT 269086 || ||| | || | ||| | ||| ||| || |||||||| || || | Sbjct 5747 GAG---AGAGT-TTCTGTTCAACGCCATTGA-AACGCTGCCCTGTGTGAAGAAGAAGGCA 5801 Query 269087 GAATGGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCT 269143 || ||||| |||| ||||| | |||| ||| | |||||| | | ||||| Sbjct 5802 GACTGGGCCTTGAATTGGATCGCCAGTGATAAGGCGAACTTTGGAGAACGTGTGATTGCT 5861 Query 269144 TTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAG 269203 ||||| ||||| ||||| || || || || |||||| ||||||||||| | ||| Sbjct 5862 TTTGCAGCTGTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAAG 5921 Query 269204 AAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGT 269263 ||| |||| || ||||| || || || ||||| || ||| |||| | |||||||| Sbjct 5922 AAACGAGGTCTAATGCCTGGTTTGACCTTCTCCAATGAACTGATTTCACGAGACGAAGGA 5981 Query 269264 TTACACTGCGACTTCGCTTG 269283 | ||||| || |||||||| Sbjct 5982 CTGCACTGTGATTTCGCTTG 6001 >seq35246 Length=3738 Score = 109 bits (120), Expect = 1e-18 Identities = 470/724 (65%), Gaps = 43/724 (6%) Strand=Plus/Plus Query 237987 CAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATAAACAAGAATACGGT 238046 ||||| || |||||||||||||| || ||||| ||| ||| |||||||||| |||| | Sbjct 1487 CAAGTAGATGCTCACAATATTGTCCCGATTTGGGTAGCCTCTAATAAACAAGAGTACGCT 1546 Query 238047 GCTAGAAC-ATTACGTAAGAAAATAAATGGTATGTTAGATACATATCTTACAGAATTTCC 238105 |||||||| |||| | || || || ||| | |||| |||||| | |||| || Sbjct 1547 GCTAGAACTATTA-GAAATAAGATCAATAACAATTTAGGAGAATATCTCCAAAAATTCCC 1605 Query 238106 TGTAATAACTAAACATCCTT--------ACGGA--CCATTT--TCAGTATCCATCGCAAA 238153 | || |||||||||| || || | |||| || || | || | | Sbjct 1606 AGCTTTACTAAAACATCCTTTAAAAACTACTGAAACGATTTCTTCCGT--CAATTGGGAG 1663 Query 238154 TAA---TA-AAGGAG-TAGAGTTTGACGATACTGTTCATCCAGTATCGTGGGCAGTACCT 238208 || || || || ||||| | ||| |||||| || |||| ||||| |||| Sbjct 1664 GAAGCTTATAATAAGCTAGAGGTAGACATGACTGTTGATGAAGTAGATTGGGCTAAACCT 1723 Query 238209 GGTTCTAAAGCCGCGTTTAAAGTATTAGATGATTTCCTAAAAAACAGGCTAGCTGCATAC 238268 |||| |||||| | ||||||| ||||| || || || |||| | | | ||| Sbjct 1724 GGTTATAAAGCAGGCATTAAAGTTTTAGAAGAGTTTCTTCAAAAGCGTTTGAATTCATTT 1783 Query 238269 GAATCGGATCATAACAAT--CCTACATGTGAA-GCGTTGAGTAACCTATCACCGTGGTTA 238325 ||| ||| | | || || | || | || || ||| || || || || ||||| Sbjct 1784 -AAT--GATAAAAGAAACGACCCAAATATAAAAGCTTTGTCGAATCTCTCTCCCTGGTTC 1840 Query 238326 CATTTCGGTCATATATCTGCTCAACGTGTAGTTTTAGAAACATTAAAATATAAGAGTATA 238385 ||||| || || || ||| ||| | | | | | ||| | || | ||| | Sbjct 1841 CATTTTGGACAAATCGCTGTCCAAAGGGCAATCCTTGAAG--TGAAGAAATACCC----A 1894 Query 238386 CATCCTAAATCTGTAAGCGTA------TTTTTAGACGAAATCATCATAAGACGTGAACTA 238439 | | || || | |||||| |||| || ||| || | |||| ||| | Sbjct 1895 AAACGAAACTCGGAAAGCGTTGCTTCGTTTTGCGAAGAAGCAATTGTTCGACGAGAATTG 1954 Query 238440 GCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAATCCACACATTCATGG 238499 || ||||||||||||||||| ||||||| |||||| ||| || | || ||| Sbjct 1955 GCCGATAATTTTTGCTATTACAATAAAAATTATGATAGTATGGATGGTTTATATGATTGG 2014 Query 238500 GCACGAGAA-ACATTAGAAGCACACGTAAATGATAGAAGAAAATATATTTACTCTTTAAA 238558 || |||| || ||| | | ||| || |||| | | ||||| | ||| | ||| Sbjct 2015 GCGA-AGAAGACCTTAAACGATCACAGGAAGGATAAACGGGAATATTTATACACCAAAAA 2073 Query 238559 ACAGCTCGAGAGAGCCGAAA-CTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGG 238617 || | || |||| | ||| |||||||| | |||||| | ||||| || || ||| Sbjct 2074 GGAGTTTGA-AGAGGCAAAAACTCACGATGATTTGTGGAATGCAGCCCAAATTCAGTTGG 2132 Query 238618 TAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAAT 238677 ||| | || ||||| || ||||||| |||||||||||||| || ||||| || || | Sbjct 2133 TAAAAGAGGGAAAAATTCACGGTTTCTTGCGAATGTATTGGGCAAAGAAGATTCTAGAGT 2192 Query 238678 GGAC 238681 |||| Sbjct 2193 GGAC 2196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150765733205288