Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2923 125 4e-24 seq33603 118 6e-22 seq2869 116 2e-21 seq18754 111 8e-20 seq10612 111 8e-20 seq8228 111 8e-20 >seq2923 Length=23356 Score = 125 bits (138), Expect = 4e-24 Identities = 90/103 (87%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 11429 AAATA-TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| ||||| |||| ||| ||||||||||||| |||||||||| |||||||| Sbjct 14770 AAATAGTAGAAAAAATATCAAAAAAAATTGGCCCATGGGGGGATCGAACCCACGACCTTC 14711 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 14710 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 14668 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11429 AAATA-TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| ||||| |||| ||| | ||||||||||| |||||||||| |||||||| Sbjct 11071 AAATAGTAGAAAAAATATCAAAAAAGATTGGCCCATGGGGGGATCGAACCCACGACCTTC 11130 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 11131 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 11172 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 13963 TAAAAAAG--AATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGA 14020 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| |||||||||||||||||||||| Sbjct 14021 CGCTCTAACCAACTGAGCTAATGGGCCGT 14049 Score = 114 bits (126), Expect = 7e-21 Identities = 78/87 (90%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 14929 AATAGAAAAA-AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 14871 Query 11501 GACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||| |||||||||||||||||| Sbjct 14870 GACGCTCTAACCAACTGAGCTAATGGG 14844 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||| | ||| ||||||||| |||||||||| ||||||||||||||||||| Sbjct 15989 TTAAAAAAGTAAAAAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGC 15930 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 15929 ACGACGCTCTAACCAACTGAGCTAATGGGCC 15899 >seq33603 Length=9218 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 6708 TTAATTGAAAA--AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGC 6765 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 6766 ACGACGCTCTAACCAACTGAGCTAATGGGCC 6796 >seq2869 Length=57298 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 48584 AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 48643 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 48644 CAACTGAGCTAATGGGCC 48661 >seq18754 Length=10463 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 4265 AAAATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 4324 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 4325 CAACTGAGCTAATGGGCC 4342 >seq10612 Length=70908 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 47068 AAAATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 47009 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 47008 CAACTGAGCTAATGGGCC 46991 >seq8228 Length=25074 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 7368 AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 7309 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||| ||||||| Sbjct 7308 CAACTGAGCTTATGGGCC 7291 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261354525577336