Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq22640 120 3e-22 seq19288 113 4e-20 >seq22640 Length=7414 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 ||| | ||||||||| | || || ||||| || | ||| || ||| || ||| | Sbjct 1245 TCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 1304 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| |||||| | || || |||| ||||| || || ||||| || || || Sbjct 1305 ATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGAATTCCCTCCTT 1364 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || |||||||| ||| ||||||| | | || || || | ||||| Sbjct 1365 GTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACCTCGAGGGTGAT 1424 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||| ||||||||||| Sbjct 1425 AGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCAT 1460 >seq19288 Length=6598 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||||||||| | ||| || ||||| || | ||| || ||| | Sbjct 4249 CCTCCCCTCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4308 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||||||||||| || || | || || || | ||||||||||| ||| Sbjct 4309 AGGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 4368 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| || ||| |||||| | | | ||||| Sbjct 4369 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACC 4428 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || | || || || ||||||||||| Sbjct 4429 TCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCAT 4475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448050882294960