Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq25027 143 3e-29 >seq25027 Length=9736 Score = 143 bits (158), Expect = 3e-29 Identities = 503/785 (64%), Gaps = 16/785 (2%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || || ||||| | | |||||| || || | || ||||| | ||| | || Sbjct 6350 TTAGAAGTCGGCATCCAGGGTGAAAACGTTGTCCTGACCGTTGGACATGACTCCGAACTT 6291 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| || |||| || | || ||||| ||||| ||||| || || | || ||| | || Sbjct 6290 TTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAACTC 6231 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 ||| |||| || |||||| | || | ||||| | ||||| || || | Sbjct 6230 CATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCCCAGCTCCACTAGAAG 6171 Query 21307 TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTT 21366 | || || |||||||| || || |||| | || || ||||| ||||||| | Sbjct 6170 ACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGATCATGTC 6111 Query 21367 TACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATT 21426 ||| |||||||| | |||||| || | ||| || ||||||||| || || | Sbjct 6110 TACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGATGATTTC 6051 Query 21427 TATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATC 21486 || || | | | || | || || ||||| ||||| | || || ||||| Sbjct 6050 AATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACATGAGGCAAGCGAAATC 5991 Query 21487 ACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAA 21546 ||| |||| ||||| || | || | |||||| || || || ||||| ||||||| Sbjct 5990 ACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGGCATTAG 5931 Query 21547 TCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC--TGAAAAGAAAATGCCCTCA 21604 |||| || |||| |||||| || || ||||| ||| |||||| | ||||| || Sbjct 5930 ACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAA--AGATGCCTTCC 5873 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT----ATCCA 21660 || || ||||| |||| | ||||| || | | | | ||||| | | ||||| Sbjct 5872 ACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCG---CCTTATC-ACTGGCGATCCA 5817 Query 21661 TTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 || ||||| | |||||| | || | ||| | || ||||| || || || || Sbjct 5816 ATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACAG 5757 Query 21721 ATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGA 21780 | | | | || || || ||| || ||||||||||| Sbjct 5756 AAACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCTGTACATTTCAGA 5697 Query 21781 ATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC--TGAACATTGA 21838 |||| ||| || || || |||||||| ||||| || | | ||||| ||| | || Sbjct 5696 GTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTCGGTGACC--TGC 5639 Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 ||||| | || |||| ||||||| ||||| || ||||| |||||||| |||||| Sbjct 5638 ACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACTGGCTGCAAAA 5579 Query 21899 AATGC 21903 || || Sbjct 5578 AAGGC 5574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531615661278640