Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq35246 105 6e-18 seq25027 84.2 2e-11 >seq35246 Length=3738 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| || ||||| | |||||||| || || ||| | || ||||| ||||||| Sbjct 2091 AAACTCACGATGATTTGTGGAATGCAGCCCAAATTCAGTTGGTAAAAGAGGGAAAAATTC 2150 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 |||| | | | || ||||| ||||| || |||||||| |||||||| ||| || || | Sbjct 2151 ACGGTTTCTTGCGAATGTATTGGGCAAAGAAGATTCTAGAGTGGACAGAAAGCCCAGAAC 2210 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 |||| | ||||| || || | || ||| | | ||| || || ||| | ||||||| Sbjct 2211 AGGCTTTGGAGTACGGAATCTACTTGAATGATCGTTTCAGCCTTGATGGTAGAGATCCTA 2270 Query 71850 ACGGTTATGTCGG 71862 | ||||||||||| Sbjct 2271 ATGGTTATGTCGG 2283 >seq25027 Length=9736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 343/535 (64%), Gaps = 23/535 (4%) Strand=Plus/Minus Query 119632 CTCCGAACCGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAG 119691 |||||||| | ||| || || || || || || ||||| ||||| ||||| || | Sbjct 6300 CTCCGAACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCG 6241 Query 119692 ATATGTTATTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACT 119751 | || | ||| || | ||||||||||| |||||| | || ||| |||| || Sbjct 6240 AGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCCCAGCT 6181 Query 119752 CGAACAACAGTCGATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATG 119810 | | | || || || || ||||| || ||||| | |||| | |||| | |||||| Sbjct 6180 CCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGC-AGTTCATG 6122 Query 119811 CCCAACATAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCT 119870 || | ||| | || || | ||| | || ||||| |||| ||||||| | || ||||| Sbjct 6121 CCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTC- 6063 Query 119871 ACAAACATACTCAACACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTG 119930 || | |||| | | | || | |||| ||| | | | | | ||| Sbjct 6062 ACGGATGATTTCAATAATTCGTTCCT-------TTGTCGGCTTCTGCACCA-AGTGTTTG 6011 Query 119931 TAGTATAGACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTG 119990 | || ||||| || || ||| ||||||||||||| ||||| ||||| ||| | Sbjct 6010 AACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAG 5951 Query 119991 TAAGTCAAGCCGGG---TAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCA 120047 | ||||| || || |||| ||| || ||||| | | |||| | ||| Sbjct 5950 AAGGTCAAACCAGGCATTAGACCTCGTT--------TCTTT-AGCCAAAAGATAGAGGCA 5900 Query 120048 AAACTACCAGaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAAT 120107 || || ||| ||||||| |||||| || |||||||| | || ||||| | || Sbjct 5899 AAGCTTCCACTGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAG 5840 Query 120108 GTGGCAGATTGATTTTCGATCCATTTTTGAGCCCAAGCCGCCTTCTGCTTGACAC 120162 | || | | | ||||||| || ||||| | ||||||| ||| |||| Sbjct 5839 TTCGCCTTATCACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACAC 5785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478405801053920