Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq368 132 1e-25 seq25828 104 6e-17 seq35853 95.1 3e-14 seq36862 89.7 1e-12 >seq368 Length=53407 Score = 132 bits (146), Expect = 1e-25 Identities = 201/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 111607 TTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGG 111666 || |||| ||||| ||| ||| | ||||||||| ||| ||||||||| | | Sbjct 46681 TTTAGAAAAACCCCACTGATCGAAGAATTATTATGTCTGCCTGGAACCCACCGGATCTTC 46740 Query 111667 AAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGC 111726 |||||||||||||| || || || | || ||||||||||| | ||| Sbjct 46741 CGAAAATGGCACTTCCTCCTTGCCACTGTCTGGTACAGTTTTATGTGGCAAATGGGGAAT 46800 Query 111727 TTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTG 111786 | || || ||| ||||||| ||||||||||||| || | || ||||| ||||| || | Sbjct 46801 TATCTTGTCAATTGTATCAAAGATCTGCTGATATGGGCTTAGGAGTTCCTTTTAACATAG 46860 Query 111787 CAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAAT 111846 | ||||| || || || |||| | ||||| || | || ||||||||||| || || | Sbjct 46861 CCAGTTATGCTCTCCTCACTTATATGATCGCCCACGTCACCAATCTCAAACCAGGAGACT 46920 Query 111847 TCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892 | | ||| | | |||||||| || || || | ||||||||||| Sbjct 46921 TTGTCCACACTCTGGGAGATGCCCACGTCTATTCTAACCACATTGA 46966 >seq25828 Length=6072 Score = 104 bits (114), Expect = 6e-17 Identities = 280/416 (67%), Gaps = 18/416 (4%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || || || ||||||||||||||||| | || || || Sbjct 328 GCCCCAATGCCAACCGCTTCCACAGCTCAAATCCTCGGAAACAACGAATCGTTTGAGCC- 386 Query 364810 TTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 ||||| | || | || || || ||| | || |||||||| | ||| || ||| Sbjct 387 -TTACACGTCGAACATCTACAATCGTCGAGTTTTGTCTGGAGAATTCCAGGTGGTGAATC 445 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATA 364927 | | | || || | |||| | | ||||| ||| |||||||||| | | Sbjct 446 GTCATTTGCTGAAAGACTTAACCGAACTGGAATTGTGGAATGATGACATGAAGAACAAAA 505 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA--AGATCTGAAGCC 364985 |||| || ||||| || | || || || | || | ||||||| | ||| | |||| Sbjct 506 TCATTGCACACAATGGATCCATTCAAAATATACTAGAAATTCCAGATGAAATCCG-AGCC 564 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC-TCATTG-ATATGGCGGCCGAT 365043 |||||||||| || ||||||| || || || | || || ||||||| || ||| Sbjct 565 -CTTTACAAAACAGTTTGGGAAA--TCAGTGTAAAGGCAACAATGAATATGGCTGCTGAT 621 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA---TGACTCAGCCAACC 365100 || ||||| ||||| ||| || ||| | |||||| ||||| || || || | | Sbjct 622 CGAGGTGCCTTTATTGATCAAAGTCAGGCTTTTAAC--ATTCACGTTGTGGCA-CCGAAC 678 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | || | || || || || ||||||| |||||| |||||||||||| || Sbjct 679 TATGGAAAATTAACTTCAATCCACTTCTACGCTTGGAAACTCGGTCTTAAGACCGG 734 >seq35853 Length=3953 Score = 95.1 bits (104), Expect = 3e-14 Identities = 270/411 (66%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || || || ||||||||||||||||| | || || || Sbjct 3826 GCCCCAATGCCAACCGCTTCCACAGCTCAAATCCTCGGAAACAACGAATCGTTTGAGCC- 3768 Query 364810 TTTACAAG--CAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 ||||| | ||| | || || || ||| | || || ||||| | ||| || ||| Sbjct 3767 -TTACACGTCCAACATCTACAACCGACGAGTTTTATCAGGGGAATTCCAGGTGGTGAATC 3709 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATA 364927 | | | || || | |||| | | ||||| ||| |||||||||| | | Sbjct 3708 GTCATTTGCTGAAAGACTTGACCGAACTGGAATTGTGGAATGATGACATGAAGAACAAAA 3649 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTA 364987 |||| || ||||| || | || || || | | |||| ||||| | || Sbjct 3648 TCATTGCACACAATGGATCCATTCAAAATATAGAGGAAATTCCTGAAGACATTCGAGCTC 3589 Query 364988 TTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCG 365047 |||| ||||| || ||||||||| | |||| || | ||||| || ||||| | Sbjct 3588 TTTATAAAACTGTGTGGGAAATTAGTGTAAAAACTACAATCAACATGGCTGCTGATCGAG 3529 Query 365048 GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG--CCAACCTCCGC 365105 | || ||||| ||| |||||||| |||||| ||||| | | | | || | | || Sbjct 3528 GAGCCTTTATTGATCAAAGCCAGTCTTTTAAC--ATTCACGTCGCTGCACCGAATTACGG 3471 Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||| || || || || ||||| || |||||| || || ||||| || Sbjct 3470 AAAGCTAACTTCGATTCACTTCTATGGATGGAAACTGGGACTGAAGACGGG 3420 >seq36862 Length=1067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 171/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 145532 TAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTC 145591 || ||||||||| |||||||||||||| || || || |||||||| || |||| | || Sbjct 266 TAGATCTTCATCGGAAAATCCAGTTCCAATTTTACAAACACTTTGATACTCTTCGTTATC 325 Query 145592 TGGATCATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGT 145651 | | || || || || || || ||||||| || || | || || || | Sbjct 326 TTGGTCGTAGCAGGCGAGGAGAAATCCACCATAAGTTCCGGTTCTCTTCCCCTTTCCTCT 385 Query 145652 ATACCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTT 145711 || || ||||| ||| | ||| ||| |||| ||| | ||||||||| ||||| Sbjct 386 GTATCCGCCAATTACTACTAAATCGAGGGAATCTCCCACTCCAGAAAGATAATCTTTTTT 445 Query 145712 AAGTTTTAGCCAATTGAGAGAACGTTT--CGATGGTTCATAGCTAGAGTTATCGTCCAAT 145769 |||||| | |||||| || ||||| |||| ||||||| ||| || | | ||| Sbjct 446 AAGTTTCAACCAATTCCTTGATCGTTTTGCGAT--TTCATAGGTAGCGTCTTTTTTCAAA 503 Query 145770 GATTTTACCA 145779 | ||| |||| Sbjct 504 GTTTTCACCA 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302637437336852