Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq35853 102 7e-17 seq25828 86.0 5e-12 >seq35853 Length=3953 Score = 102 bits (112), Expect = 7e-17 Identities = 349/533 (65%), Gaps = 12/533 (2%) Strand=Plus/Plus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 || || |||||||||| || ||||||| || |||| |||||||||||| ||||||||| Sbjct 3369 ACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCCCGTCTTC 3428 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 | || | ||| ||| ||| || || | || || ||| | || || Sbjct 3429 AGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGGTGCAGCG 3488 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 || | || | || || || ||||| || | | ||| | || || ||||| || Sbjct 3489 ACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGCCATGTTG 3548 Query 132044 AACAATACTTTCTGCT-TAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGG 132102 | || ||| | | |||||||||| | || || | || || | ||| | || Sbjct 3549 ATTG-TAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGTCTTCAGG 3607 Query 132103 AATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTCTGT 132162 ||| || || ||||| || | ||||| |||| | || ||||| || ||| || | Sbjct 3608 AATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCATGTCA-T 3666 Query 132163 CGAGTACACG-TTGCAGTCTA--CGAGTTTATCGACGAGATGTTGATTTACTATTTGATA 132219 | | | ||| || |||| | ||| | || | | ||| |||| || | || | Sbjct 3667 C-ATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAA-ATGACGATTCACCACCTGGAA 3724 Query 132220 TTCACCCGATAAGACTCTTCGTACGTACAAATT--ACTAGTAAACGGCTCGAACGATTCG 132277 ||| || ||||| |||| ||| ||| | || || |||| ||||| ||||||||| Sbjct 3725 TTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAA--GGCTCAAACGATTCG 3782 Query 132278 TTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAATTG 132337 |||||||| | ||||||||||| | || || ||||| ||| | || | || || Sbjct 3783 TTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAGTTT 3842 Query 132338 CGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATC 132390 | || |||||| | || |||| | ||| ||||| |||||||||||| ||| Sbjct 3843 CTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCACAAATC 3895 >seq25828 Length=6072 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 132263 GGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCA 132322 ||||| ||||||||||||||||| | ||||||||||| | || || ||||| ||| Sbjct 218 GGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCC 159 Query 132323 ATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTC 132382 | || | || || | || |||||| | || |||| | ||| ||||| |||||||| Sbjct 158 AACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTC 99 Query 132383 CACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCA 132442 |||| ||| | | | | | ||||||| || |||| | | ||| ||||| | Sbjct 98 CACAAATC---TGTTGGCGTTTTGTTCCACATGTCGTACTGCAGAATACCCTTACTTACC 42 Query 132443 GGAGATCCGTTATAAGAATCGTA 132465 ||| |||| | |||| ||||| Sbjct 41 GGACATCCTTGGTAAGTCTCGTA 19 Score = 86.0 bits (94), Expect = 5e-12 Identities = 177/257 (69%), Gaps = 11/257 (4%) Strand=Plus/Minus Query 133022 TCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGAC 133081 |||||||| || || | || || ||| || || | ||||||||||||||||| || Sbjct 5444 TCAAATTCATCTCCCCAACAATCAAACAATCCAGGGGAATCGTCAGGACACATCAAGCAC 5385 Query 133082 CATTTTTCTCC-TGCGCT--CACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAA 133138 || ||| || | | || |||||| ||||||||||| || |||| | || || Sbjct 5384 CA---TTCGCCATTCTCTTCCACCCTCTTCATGAACAAGTCTGGAATCCAAAGAGCGTAA 5328 Query 133139 AATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagt 133197 |||||||| | ||| | | | | |||| | || |||| || || | ||| ||| Sbjct 5327 AATAAATCTCTAGCTCGTTCT-TTTTCCTCTCCTGTATTCTTCTTTAAATTCAAGAAATC 5269 Query 133198 aaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCC---TTTCCTTTTACC 133254 ||| ||||| |||||||| ||||| | ||| | |||| | || || | | | || || Sbjct 5268 AAATATGTCGGCATGCCACGGCTCTAAATAAATGGCCCAGGCCCCGGGTCTTTTGTTTCC 5209 Query 133255 TCCCTGATCCACATGTC 133271 || |||||||||| || Sbjct 5208 GCCTTGATCCACATATC 5192 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 132263 GGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCA 132322 ||||| ||||||||||||||||| | ||||||||||| | || || ||||| ||| Sbjct 386 GGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCC 327 Query 132323 ATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTC 132382 | || | || || | || |||||| | || |||| | ||| ||||| |||||||| Sbjct 326 AACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTC 267 Query 132383 CACAGATC 132390 |||| ||| Sbjct 266 CACAAATC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429711284007330