Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq22640 140 3e-28 seq19288 131 2e-25 seq25828 93.3 4e-14 >seq22640 Length=7414 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || ||||| || || | ||| |||||||| || |||||||| ||| | Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || || |||||||||||||| || Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGA 1353 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | || || | || ||| | Sbjct 1354 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACC 1413 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||||| || ||||| || || ||||| |||||||| Sbjct 1414 TCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCAT 1460 >seq19288 Length=6598 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| ||||| || || | || |||||||| || |||||||| ||| | Sbjct 4249 CCTCCCCTCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4308 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| | || ||||||||||| || || || Sbjct 4309 AGGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGA 4368 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | ||| | ||| |||| || ||||| Sbjct 4369 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACC 4428 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || ||||| |||||||| Sbjct 4429 TCAAGGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATCTGCAT 4475 >seq25828 Length=6072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 297/454 (65%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 145337 TCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGC 145396 || || ||||| ||||| || ||| ||||||| || ||| ||| || ||| | | | Sbjct 5978 TCACAGCTCGCTTCCAGGGCCCCGTAATAAATAGTTTCGAAAATCTGTTGGTTCAATAAC 5919 Query 145397 ATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGT 145456 ||| || |||| ||||| ||||| | || ||| | || || || || | ||||| Sbjct 5918 TGCGCCTCTGCGCTTTCGTAGGGCATTCTCATCAGGATGAAGGCGTCTGCCAAGCCCTGG 5859 Query 145457 ATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATA 145515 | || | ||||| || |||||| |||| || | ||||| || | | ||||| Sbjct 5858 ACACCAATTCCGATCGGACGATGTCTCATATTCGATGTTTTCGCCT-CTGGTACGGGATA 5800 Query 145516 TCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACT-ACCTTT---GTAATGTGCC 145571 ||| || || | ||||| | | ||| || | ||| || || | | | Sbjct 5799 ATAATTGATATCAATCACCTTATTTA-GATTC---CTTGTCACCGTTTTGGTCACTTCCT 5744 Query 145572 GCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCG 145631 ||| || | ||| || || ||| | ||| |||| | | || | |||||||| Sbjct 5743 TCAATTTCTTAAAATCGTACTTCTTCTCAGCTACGTTCACAAACATGTTCAGGGCGATCG 5684 Query 145632 ACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACA 145691 | |||| ||||| || ||| ||| || | |||||||| || ||||| | ||||| Sbjct 5683 ATGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTATTCCACAATCTCTGTGCACA 5624 Query 145692 AATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCT 145751 ||| || ||| || || || | ||| |||||||| || || || || || || |||| Sbjct 5623 GATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTATTACAGGCATCCT 5564 Query 145752 TGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 | || ||||| || || ||||||||||| || Sbjct 5563 TATAAAGCATATAAGGCATTCCAGTCTCCACTTG 5530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471759765738240