Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19288 113 4e-20 seq22640 89.7 4e-13 >seq19288 Length=6598 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || |||| | ||||| Sbjct 4264 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCC 4323 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || |||| | ||||| || || || | ||||| ||||| Sbjct 4324 TCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 4383 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||||| |||||| || | |||||||| Sbjct 4384 TGGATCTTGGC--CTTCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGG 4441 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || ||||||| || ||||| || |||||||| ||| Sbjct 4442 TCTTGCCGGTCAATGTCTTGACGAAGATCTGCATCTTG 4479 >seq22640 Length=7414 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| | | ||| Sbjct 1249 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 1308 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || |||| | ||||| |||||| || | ||||| ||||| Sbjct 1309 TCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 1368 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| ||||||| || | |||||| | Sbjct 1369 TGGATCTTGGC--CTTGACATTCTCGATCGTGTCAGAGGGCTCCACCTCGAGGGTGATAG 1426 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || || || || || || || ||||||||| Sbjct 1427 TTTTCCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404876271389140