Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq19288 111 1e-19 >seq19288 Length=6598 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 24990 AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTG 25049 ||||| | ||||| || || || ||||| |||||||| || ||||||| | || || Sbjct 4484 AACGGCAAGATGCAGATCTTCGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTC 4425 Query 25050 GAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 ||| | || |||||||||||| ||||| || ||| ||||| || || ||||| Sbjct 4424 GAGCCCTCCGACACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCC 4365 Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || || ||||| | ||||| || ||||| || | || || | || || || | Sbjct 4364 CCAGATCAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCC 4305 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || ||||| || || || ||||| | || || ||||| Sbjct 4304 GACTACAACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTGAGGGGAGG 4249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433101511100090