Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25027 340 2e-88 seq967 125 8e-24 seq20422 114 1e-20 >seq25027 Length=9736 Score = 340 bits (376), Expect = 2e-88 Identities = 656/959 (68%), Gaps = 13/959 (1%) Strand=Plus/Minus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCAC 92800 ||||||| || ||||| || || || || ||||| | | || ||| || || Sbjct 6351 ATTAGAAGTCGGCATCCAGGGTGAAAACGTTGTCCTG---ACCGTTGGACATGACTCCGA 6295 Query 92801 ATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||||||||||| || || || || || |||||||| ||||| || || | || || Sbjct 6294 ACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAA 6235 Query 92861 AATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC--AACTCGTA 92916 | | || | ||| ||||| |||||| | ||||| | || | ||| | Sbjct 6234 ACTCCATGAAATTGAAAGGATT--TGGCGTGTTGTAGATTTTCTCGACTCCCAGCTCC-A 6178 Query 92917 CAATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTA 92975 | | || | || || |||||||| ||||| ||||||| | || ||||| || | Sbjct 6177 CTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGA 6118 Query 92976 GAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || |||||||| |||||||| || | || || || |||||||| | Sbjct 6117 TCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGA 6058 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||||| || | || |||| || || || || | | ||| |||| | ||| | Sbjct 6057 TGATTTCAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACATGAGGCAAG 5998 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 | || || || | |||||||||||||| |||| |||||| ||| || ||||| | Sbjct 5997 CGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAG 5938 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || ||||||||||| |||||||| || || ||||| || ||| ||||| || | Sbjct 5937 GCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAAAGATGC 5878 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| |||||||| || | | |||||| |||| || || || |||| ||||| Sbjct 5877 CTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTATCACTGGCGATCC 5818 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || || ||||| || || || ||||| | ||| || || ||||| || ||||| || | Sbjct 5817 AATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACA 5758 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | |||| ||| | | || | ||||| |||| || | | |||||||||| Sbjct 5757 GAAACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCTGTACATTTCAG 5698 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || ||||||||||| || || || || |||||||| | | ||| || |||| ||||| Sbjct 5697 AGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTCGGTGACCTGCA 5638 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || ||| || | || || | || ||||| || || || || |||||||||| Sbjct 5637 CCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACTGGCTGCAAAAA 5578 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCAT-CTTTAAGCTTATCCCAATCGGAT 93574 | || | | ||| || ||||| ||||| ||| | | ||| |||||||||| Sbjct 5577 AGGCAAGCACATGGGAAATGAAATGCCTCTCA-CATGGCTGCATCTTCTCCCAATCGGCC 5519 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | ||||| || | || || ||||| |||||||| || || || || || |||||||| Sbjct 5518 ATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCAGCCTTTTTGTAA 5459 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 | ||||| ||||||| || |||||||| ||||| || || | | ||||| ||||| Sbjct 5458 AAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAACCTCCTGGGGTTCTCTTT 5400 >seq967 Length=44044 Score = 125 bits (138), Expect = 8e-24 Identities = 82/88 (93%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 |||||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||| Sbjct 486 AGTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCCCTGATGGGAGC 544 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 545 GTGGGTTCGAACCCCACACCTGACAAAT 572 >seq20422 Length=7151 Score = 114 bits (126), Expect = 1e-20 Identities = 77/84 (92%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCG 126323 ||||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||| Sbjct 5116 GTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCCCGGATGGGAGCG 5058 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 5057 TGGGTTCGAACCCCACACCTGACA 5034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556562280846640