Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq35853 172 5e-38 seq25828 149 5e-31 seq22640 114 1e-20 seq19288 111 1e-19 seq11803 109 5e-19 >seq35853 Length=3953 Score = 172 bits (190), Expect = 5e-38 Identities = 334/493 (68%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 128777 ACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGC 128836 |||| || || ||||||| ||| |||| | || || || || || ||||| ||||| | Sbjct 3361 ACTTATCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTC 3420 Query 128837 CTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGG 128896 | || |||| || |||||| | | |||||||| || | | | |||| | | Sbjct 3421 CCGTCTTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCG 3480 Query 128897 GTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 || | | ||| ||||| || || |||||||||||||||| || ||||| |||| Sbjct 3481 GTGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAG 3540 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGT 129016 |||| || | |||| || | ||||||||||| ||||| ||||| ||| | || Sbjct 3541 CCATGTTGATTGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGT 3600 Query 129017 GTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076 || || ||||| || || || || | | || |||| |||||| |||||||| || Sbjct 3601 CTTCAGGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCA 3660 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTT 129136 | | || || |||| | ||||| | |||| || | ||| | || | || | Sbjct 3661 TGTCATCATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACCT 3720 Query 129137 GAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATT 129196 | || || || | ||||| || || ||| |||||| ||| | ||||||||||||| Sbjct 3721 GGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGATT 3780 Query 129197 CATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGT 129256 | ||||| || | |||||||| || | ||||| ||||| |||| ||| |||| Sbjct 3781 CGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAGT 3840 Query 129257 TTCGCAAACCGTG 129269 ||| || |||||| Sbjct 3841 TTCTCACACCGTG 3853 Score = 156 bits (172), Expect = 4e-33 Identities = 286/419 (68%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || ||||||| ||| || | | |||| ||| | | | ||||||||||| || Sbjct 559 TTGTCGACTGTAAATTGAATCGCATTCACTGCAGGCCTTATCCTTAAATAGTACATTCCC 500 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || |||| || ||||||| | | |||||||| || | | | |||| | ||| Sbjct 499 GTCTTCAGTCCCAGTTTCCAACCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGGT 440 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | ||| ||||| || || |||||||||||||||| || ||||| |||||| Sbjct 439 GCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGCC 380 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || | |||| || | ||||||||||| ||||| ||||| ||| | || | Sbjct 379 ATGTTGATGGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGTCT 320 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 | || ||||| || || || || | | || |||| |||||| |||||||| ||| Sbjct 319 TCAGGAATTTCCTCTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCATG 260 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || || |||| | ||||| | |||| || | ||| | || | |||||| Sbjct 259 TCATCATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACTTGA 200 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || || | |||||| || ||| ||| ||||| ||| | |||||||||||||| Sbjct 199 AATTCTCCAGACAAAACTCGACGATTGTAGATGTTCGACGTGTAAGGCTCAAACGATTC 141 >seq25828 Length=6072 Score = 149 bits (164), Expect = 5e-31 Identities = 349/523 (67%), Gaps = 8/523 (2%) Strand=Plus/Minus Query 128823 CAAATAGTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAA 128882 || || | |||| || || || | |||| |||||||| || | ||| || | || || Sbjct 747 CAGATTGAACATTCCGGTCTTAAGACCGAGTTTCCAAGCGTAGAAGTGGATTGAAGTTAA 688 Query 128883 CAATGCGTAGGTGGGTTGACTCaaaaa-aaTATTAAATGATTGACTTTGATCAATAAAGG 128941 | | ||| | ||| | | ||| ||| ||||| | ||||||||||||||||||| Sbjct 687 TTTTCCATAGTTCGGT-GCCACAACGTGAATGTTAAAAGCCTGACTTTGATCAATAAAGG 629 Query 128942 GGCCGCGATCGGCAGCCATACCAATCAAATTT---TTCACTTTCATTTCCCACACCGTTT 128998 || ||||| ||||||||| ||| || || || | |||||||| || |||| Sbjct 628 CACCTCGATCAGCAGCCATAT---TCATTGTTGCCTTTACACTGATTTCCCAAACTGTTT 572 Query 128999 TGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTG 129058 ||||||| ||| | | | ||| |||||| || || || | | || |||| || Sbjct 571 TGTAAAGGGCTCGGATTTCATCTGGAATTTCTAGTATATTTTGAATGGATCCATTGTGTG 512 Query 129059 CAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCA 129118 |||| |||||||| ||| | || || |||| | ||||| | | || || | || Sbjct 511 CAATGATTTTGTTCTTCATGTCATCATTCCACAATTCCAGTTCGGTTAAGTCTTTCAGCA 452 Query 129119 AGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGG 129178 | | || | || || || || || | |||||| || ||| ||| ||||| | Sbjct 451 AATGACGATTCACCACCTGGAATTCTCCAGACAAAACTCGACGATTGTAGATGTTCGACG 392 Query 129179 TGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGT 129238 || | |||||||||||||| ||||| || | |||||||| || | ||||| ||||| Sbjct 391 TGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTG 332 Query 129239 AAGCCACGCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCC 129298 |||| ||| ||||||| || |||||| | | || | | ||| | | | || Sbjct 331 GGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCC 272 Query 129299 AGTCCCACATCGATGTGGGTGTGTGATTCCACAAGTCGTATTG 129341 ||| ||||| ||| || || | ||||||| |||||| || Sbjct 271 AGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACTG 229 >seq22640 Length=7414 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| || ||||| |||| || || ||||| || | Sbjct 1460 ATGCAGATCTTCGTGAAGACCCTAACGGGGAAAACTATCACCCTCGAGGTGGAGCCCTCT 1401 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||||||||| ||||| || || || Sbjct 1400 GACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 1341 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | |||||| ||||||| | ||||| |||||| Sbjct 1340 CAGCGATTGATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 1281 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || | ||| | ||||| ||| Sbjct 1280 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGACTCCGCGGTGGT 1233 >seq19288 Length=6598 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || || ||||| || || |||| ||||| || || || Sbjct 4478 AAGATGCAGATCTTCGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCC 4419 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | || || | || || || || ||||||||||| ||||| || ||| Sbjct 4418 TCCGACACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGAT 4359 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || || ||||| ||| | ||||| ||| ||| | ||||| ||| Sbjct 4358 CAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTAC 4299 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||||| | || || || | || || | |||||| Sbjct 4298 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTGAGGGGAGGT 4248 >seq11803 Length=6467 Score = 109 bits (120), Expect = 5e-19 Identities = 322/489 (66%), Gaps = 17/489 (3%) Strand=Plus/Minus Query 129756 GCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGC 129815 ||||| |||||| | ||| ||||| | | || ||||| ||||| | || || || Sbjct 6466 GCACAGATTACTGCATCGAATAGTGCCGATGTTCTGCTGATTGCTTTTTCTATTACAGGC 6407 Query 129816 ATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAA 129875 ||||| || | ||| || || || || || || ||||| || || ||| | | | | Sbjct 6406 GTCTTTATAAAGCATATATGGAGTTCCGGTCTCCACTTGGCTTGTGATAATAGCCATCCA 6347 Query 129876 CAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAG 129935 | ||| | || ||||||| | ||||| |||| | | || || || ||||| Sbjct 6346 AAGGTCCTGTGCTTTGATCTTTTTTACATATTTCTCTTCTGATTCATACTTCATATACAA 6287 Query 129936 TTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAAC---GGCGATTCACGCGGACACAT 129992 || |||||||| || || | | | ||| || || || || ||||| Sbjct 6286 TTTATCAAATTCATCTCCCCA-ACAAT--CAAACAATCCAGGGGAATCGTTAGGGCACAT 6230 Query 129993 CAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGC 130052 ||| | ||| |||| | |||| || | ||||| ||||| || || | ||| ||||| Sbjct 6229 CAAGCACCAATCACCATTCTCTTCTACCCTCTTCATGAACAAGTCTGGAATCCATAGGGC 6170 Query 130053 GTACAACAAATCTC----GCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAA 130108 ||| |||||||||| ||| | |||| |||| | | || || | ||||| | | Sbjct 6169 GTAAAACAAATCTCTGGCGCGATATTCT-TCCTTTCC-CGTATTTTTC--TTCAGGTTCA 6114 Query 130109 GGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTT 130168 | ||||| ||||||| || ||||||||||| || |||| |||| |||||| | || Sbjct 6113 GAAAATCAAAAATGTCTGCATGCCACGGTTCCACGTAAACTGCCCATGCGCCGGGTCTTT 6054 Query 130169 TG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCA 130225 || || |||||||| | || || |||| || ||||| || ||||| | | ||| Sbjct 6053 TGTTCCCGCCTTGGTCCAGATGACGGGCGGCGTTATTGTAAGTTCTTAACATCGGCACCA 5994 Query 130226 ATCCGTTGG 130234 || |||| Sbjct 5993 GGCCTTTGG 5985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419508619454590