Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1178 95.1 2e-14 seq40289 91.5 3e-13 seq39538 91.5 3e-13 seq12896 91.5 3e-13 seq4345 91.5 3e-13 seq3490 91.5 3e-13 seq548 91.5 3e-13 seq13221 89.7 1e-12 seq9224 89.7 1e-12 seq2172 89.7 1e-12 seq1564 89.7 1e-12 seq10705 87.8 4e-12 >seq1178 Length=25966 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 19503 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 19562 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 19563 AGCCCCACGTTGGGC 19577 >seq40289 Length=1882 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 936 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 877 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 876 AGCCCCACGTTGGGC 862 >seq39538 Length=1777 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 886 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 827 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 826 CCCCACGTTGGGC 814 >seq12896 Length=1576 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 708 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 767 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 768 CCCCACGTTGGGC 780 >seq4345 Length=10194 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 |||||| | ||||| ||||||||||||||||| | ||||| | |||| | || Sbjct 3359 TGCACTTTGATCCTAACAGAGGGAGACTCAGCCAAGGCCCTGGCCGTCTCTGGCTTGGCG 3418 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 |||||||| | || | || || |||||||||||||||||||| ||| | |||||||| Sbjct 3419 GTGGTGGGAAGGGATCGCTACGGAATCTTCCCCCTCCGTGGTAAACTGTTAAACGTGCGA 3478 Query 217957 GATGC 217961 || || Sbjct 3479 GAGGC 3483 >seq3490 Length=10267 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 8909 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 8850 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 8849 AGCCCCACGTTGGGC 8835 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 9627 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 9686 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 9687 AGCCCCACGTTGGGC 9701 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6359 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6418 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6419 CCCACGTTGGGC 6430 >seq548 Length=27065 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 8354 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 8295 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 8294 AGCCCCACGTTGGGC 8280 >seq13221 Length=14679 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1562 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1503 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1502 CCCACGTTGGGC 1491 >seq9224 Length=17238 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 13381 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 13440 Query 142113 CCCGCCAGAGACGC 142126 ||||| || || || Sbjct 13441 CCCGCAAGGGATGC 13454 >seq2172 Length=8344 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 5055 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 4996 Query 142113 CCCGCCAGAGACGC 142126 ||||| || || || Sbjct 4995 CCCGCAAGGGATGC 4982 >seq1564 Length=7169 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1539 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1598 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1599 CCCACGTTGGGC 1610 >seq10705 Length=74703 Score = 87.8 bits (96), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCC-AAAGGTTGCGGGTTCGA 142110 |||| || ||||||| |||| ||||||||||||||||||||| |||||| |||||||||| Sbjct 58555 TGTCCCTTTGGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAAGGTCGCGGGTTCGA 58496 Query 142111 CCCCCGCCAGAGA 142123 |||||| || || Sbjct 58495 TCCCCGCAAGGGA 58483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027272027447126