Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25027 244 2e-59 >seq25027 Length=9736 Score = 244 bits (270), Expect = 2e-59 Identities = 492/724 (68%), Gaps = 7/724 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || || ||| |||||| || || ||||||||| ||| |||||| Sbjct 5571 CTTGCCTTTTTTGCAGCCAGTGACGGAATTGTGAATGAGAACTTGGTGGAACGGTTCAGT 5630 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||||||| | ||||| || | ||||||||| || ||||| || || ||||| Sbjct 5631 CAGGAGGTGCAGGTCACCGAGGCTCGGTTCTTCTACGGGTTTCAGATCGCTATGGAGAAT 5690 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 || |||||||| ||||| || ||| | || |||||||| | ||| | || ||| | Sbjct 5691 GTACACTCTGAAATGTACAGCATTCTGATTAATACGTACATTCAGGACACAGTGGAGAGA 5750 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||||| ||||| || ||| ||||||| | ||||||||||| |||||||| Sbjct 5751 GAGTTTCTGTTCAACGCCATTGAAACGCTGCCCTGTGTGAAGAAGAAGGCAGACTGGGCC 5810 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | || ||||||| ||| | || | || || || | || | || ||| | || Sbjct 5811 TTGAATTGGATCGCCAGTGATAAGGCGAACTTTGGAGAACGTGTGATTGCTTTTGCAGCT 5870 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGT 42781 || || |||||||| ||| || ||| ||||| ||||| ||||| ||| | |||| Sbjct 5871 GTGGAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAAGAAACGAGGT 5930 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | ||||| || | |||||||| || ||||| || | ||||| || ||||| | Sbjct 5931 CT-AATGCCTGGTTTGACCTTCTCCAATGAACTGATTTCACGAGACGAAGGACTGCACTG 5989 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 || || || |||||| ||||| | ||| | ||| ||||| | ||||| || | Sbjct 5990 TGATTTCGCTTGCCTCATGTTC---AAACACTTGGTGCAGAAGCCGACAAAGGAACGAAT 6046 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | |||||| || ||||||| || || |||| ||| | || | | || || Sbjct 6047 TATTGAAATCATCCGTGAAGCCGTGGTCATTGAACAGGAATTCTTGACAGACGCTCTTCC 6106 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 || | || ||||||||||| | | || |||| | ||||| | | ||||| || Sbjct 6107 AGTAGACATGATCGGCATGAACTGCAAACTGATGTCCTTTTACATTGAATTTGTCGCGGA 6166 Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || ||| || ||| || |||| || ||||||||||||| || ||| | | Sbjct 6167 CCGTCTTCTAGTG-GAGCTGGGAGTCGAGAAAATCTACAACACGCCAAATCCTTTCAATT 6225 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 | |||||| |||||| | ||||| ||||| || || ||||||||| |||| || | Sbjct 6226 TCATGGAGTTTATCTCGCTCGAGGGGAAGACGAATTTCTTCGAGAAGAAGGTCGGTGAAT 6285 Query 43141 ACCA 43144 |||| Sbjct 6286 ACCA 6289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943832963363360