Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19288 122 2e-22 seq22640 107 5e-18 seq42127 93.3 1e-13 >seq19288 Length=6598 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || || ||||| || | || || || ||||| Sbjct 4285 TCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAA 4344 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| ||||| || || |||||||| || || ||||| Sbjct 4345 ATCAAACGCTGCTGA---TCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACA 4401 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| ||| | || || || || ||||| ||||| ||||||| |||||| Sbjct 4402 TTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAATGTCTTG 4461 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4462 ACGAAGATCTGCAT 4475 >seq22640 Length=7414 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| || || | || | ||| || || ||||| || ||||||| Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| ||||| |||| ||||| || || ||| Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTG---GTCCGGG 1350 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || |||||||| || || || || || || || | || | || Sbjct 1351 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCC 1410 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || ||||| || || ||||| ||||| ||||||||| Sbjct 1411 ACCTCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 >seq42127 Length=1170 Score = 93.3 bits (102), Expect = 1e-13 Identities = 267/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 || ||||| ||||||| |||| ||||||||| ||||| || || || || || || Sbjct 948 CAGGCGTCCACGTCAGAACTGTACGGAAAAGTGGTAGAAACGCCCCAAACTGAGAAAACG 889 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 ||||| || || || || || | | ||| || |||||| | |||||| ||| Sbjct 888 CCGTTCTACCCACGGTCGCCCTATGCTTGTGCCAAAATGTACGGGTTCTGGATC-GTAGT 830 Query 72537 -AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || ||| | ||| | || || |||| | || || ||| |||||||| || Sbjct 829 CAACTACAGAGAGGCCTACAATATGTTCGCCTGTAATGGTATTCTCTTCAATCATGAATC 770 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT- 72654 || ||||| | | |||||||| | || || || | | || || || || | Sbjct 769 GCCGCGGAGAGGAGAGAATTTCGTGACCAGAAAGATTACCAGGTCCGTTGCAAAAATCTC 710 Query 72655 --TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 72712 | ||| ||||| | | | || | || ||| |||| | || |||| ||||| Sbjct 709 TCTAAATCAAATCGAATCGTTC--GAAT-TGGGCAATTTAGACTCTAAGCGAGACTGGGG 653 Query 72713 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 72772 |||| || || |||||||| ||||||||| |||||||||||||| | || | || Sbjct 652 CCATGCCAAAGACTACGTAGAGGCAATGTGGATGATGCTGCAACAACCTCAGCCTCAGGA 593 Query 72773 CTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 72817 || ||||||||| || ||| |||| || ||| | || ||||| Sbjct 592 CTTTGTGATTGCCACCGGGGAAACGCGCAGTGTTAGGGAATTCGT 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179006207186708