Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq42127 93.3 9e-14 >seq42127 Length=1170 Score = 93.3 bits (102), Expect = 9e-14 Identities = 267/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 || ||||| ||||||| |||| ||||||||| ||||| || || || || || || Sbjct 948 CAGGCGTCCACGTCAGAACTGTACGGAAAAGTGGTAGAAACGCCCCAAACTGAGAAAACG 889 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 ||||| || || || || || | | ||| || |||||| | |||||| ||| Sbjct 888 CCGTTCTACCCACGGTCGCCCTATGCTTGTGCCAAAATGTACGGGTTCTGGATC-GTAGT 830 Query 68526 -AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584 || ||| | ||| | || || |||| | || || ||| |||||||| || Sbjct 829 CAACTACAGAGAGGCCTACAATATGTTCGCCTGTAATGGTATTCTCTTCAATCATGAATC 770 Query 68585 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT- 68643 || ||||| | | |||||||| | || || || | | || || || || | Sbjct 769 GCCGCGGAGAGGAGAGAATTTCGTGACCAGAAAGATTACCAGGTCCGTTGCAAAAATCTC 710 Query 68644 --TCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 68701 | ||| ||||| | | | || | || ||| |||| | || |||| ||||| Sbjct 709 TCTAAATCAAATCGAATCGTTC--GAAT-TGGGCAATTTAGACTCTAAGCGAGACTGGGG 653 Query 68702 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 68761 |||| || || |||||||| ||||||||| |||||||||||||| | || | || Sbjct 652 CCATGCCAAAGACTACGTAGAGGCAATGTGGATGATGCTGCAACAACCTCAGCCTCAGGA 593 Query 68762 CTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 68806 || ||||||||| || ||| |||| || ||| | || ||||| Sbjct 592 CTTTGTGATTGCCACCGGGGAAACGCGCAGTGTTAGGGAATTCGT 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102273992944100