Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq22640 114 1e-20 seq3754 102 9e-17 seq11319 100 3e-16 seq1965 100 3e-16 seq15292 98.7 1e-15 seq10500 98.7 1e-15 seq3357 98.7 1e-15 seq28429 96.9 4e-15 seq16849 96.9 4e-15 seq13954 96.9 4e-15 seq2151 96.9 4e-15 >seq22640 Length=7414 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| || || ||||| || | ||| || || | || || Sbjct 1251 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 1310 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || | |||||||||||| | || | | |||||||||| Sbjct 1311 CAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 1370 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| || | | |||||| | ||||| |||| ||||| ||||| Sbjct 1371 GATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACCTCGAGGGTGATAGTTTT 1430 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||| ||||| || ||||| |||||| Sbjct 1431 CCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 >seq3754 Length=19743 Score = 102 bits (112), Expect = 9e-17 Identities = 86/103 (83%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 56998 AAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| |||||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 1212 AAAAATAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1271 Query 57057 CTCACCACTATACTACCGAGGATTGAATATATAACTTGAATAT 57099 || ||||||||||||||||| |||||| | |||| ||||| Sbjct 1272 CTGACCACTATACTACCGAG----GAATATGT-ACTTCAATAT 1309 >seq11319 Length=3659 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 56977 AACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTC 57036 || |||||| || || | ||| | || |||| |||| | |||||||||| |||||| Sbjct 2042 AAGAACAAAAAAATATTGAAAAAAGAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTC 1983 Query 57037 CCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 57081 ||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 1982 CCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGAATG 1938 >seq1965 Length=18659 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 14876 AAAAATATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 14935 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 14936 CTGACCACTATACTACCGAGGA 14957 >seq15292 Length=7190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 56998 AAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| || |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 4715 AAAAATAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 4774 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| ||||||||||||||||||| Sbjct 4775 ACTGACCACTATACTACCGAGGA 4797 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| | || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 2964 AAAGAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2905 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 2904 TGACCACTATACTACCGAGGA 2884 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| | || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3608 AAAGAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3667 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 3668 TGACCACTATACTACCGAGGA 3688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3781 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3840 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 3841 TACTACCGAGGA 3852 >seq10500 Length=78824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 75573 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 75514 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 75513 TGACCACTATACTACCGAGGAATG 75490 >seq3357 Length=31948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1152 AAAAAGAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1093 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 1092 TGACCACTATACTACCGAGGAATG 1069 >seq28429 Length=4768 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3931 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3872 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 3871 TGACCACTATACTACCGAGGA 3851 >seq16849 Length=11352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3547 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3606 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 3607 TGACCACTATACTACCGAGGA 3627 >seq13954 Length=3859 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| | || |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3532 AAAGAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3473 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 3472 TGACCACTATACTACCGAGGA 3452 >seq2151 Length=28616 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 19576 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 19517 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 19516 TGACCACTATACTACCGAGGA 19496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542921597198240