Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq35853 118 1e-21 seq25828 113 5e-20 seq19288 100 3e-16 seq22640 93.3 4e-14 seq36370 86.0 6e-12 >seq35853 Length=3953 Score = 118 bits (130), Expect = 1e-21 Identities = 351/535 (66%), Gaps = 10/535 (2%) Strand=Plus/Plus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 || || || |||||| ||||| | | || ||||| ||||| ||||||||||| || Sbjct 3363 TTATCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCCC 3422 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 || |||| || ||||||| | | ||| | ||||| || || | || Sbjct 3423 GTCTTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGG- 3481 Query 153792 TGC-GCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGC 153850 ||| || | | |||||| |||||||| ||||| || || || || ||||| || || Sbjct 3482 TGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGC 3541 Query 153851 CATGTCAATCA-AGTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGT 153909 ||||| || ||||||||| || ||||||||||||||||| || | ||| ||||| Sbjct 3542 CATGTTGATTGTAGTTTTTACA-CTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGT 3600 Query 153910 CGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCC---GGCCGCTATAATGGAATTGC 153966 | || || || || || || || | || ||| | || || || || Sbjct 3601 CTTCAGGAATTTCCTCTATATTTTGAA---TGGATCCATTGTGTGCAATGATTTTGTTCT 3657 Query 153967 GCATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTA 154026 ||||| || | |||| | ||| || |||| | ||| || | || | | Sbjct 3658 TCATGTCATCATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCA 3717 Query 154027 CTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACG 154086 | || || || || | || || || || || | ||| ||| | ||||| |||| Sbjct 3718 CCTGGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACG 3777 Query 154087 ATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAG 154146 |||||||||| || | ||||||||||| | || || ||||| |||| || | || Sbjct 3778 ATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAG 3837 Query 154147 AGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAA 154201 |||||| || |||||||||||| || | ||| | || ||||| |||||||| Sbjct 3838 AGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCACAA 3892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 153806 GTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCA-AGT 153864 |||||| |||||||| ||||| || || || || ||||| || ||||||| || ||| Sbjct 425 GTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGCCATGTTGATGGTAGT 366 Query 153865 TTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTAT 153919 |||||| || ||||||||||||||||| || | ||| |||||| || || || Sbjct 365 TTTTACA-CTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGTCTTCAGGAAT 312 >seq25828 Length=6072 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| | ||||| |||||||||||||| || | ||||||||||| | || || ||||| Sbjct 224 GTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATT 165 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || | |||||||| || |||||||||||| || | ||| | || ||| Sbjct 164 GGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCC 105 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || |||||||| | || || ||||||||||||||| |||| || |||| ||| Sbjct 104 CAGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACTGCAGAATACCCTTACTT 45 Query 154251 GCCGGAC 154257 |||||| Sbjct 44 ACCGGAC 38 Score = 107 bits (118), Expect = 2e-18 Identities = 308/465 (66%), Gaps = 29/465 (6%) Strand=Plus/Minus Query 154623 CTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGA 154682 ||||||| |||||| |||| ||||| ||||||||||||||| ||||| | || | |||| Sbjct 5648 CTGTATTCCACAATCTCTGTGCACAGATTACTGCATCGAATAGTGCCGATATTCTGCTGA 5589 Query 154683 TTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGG 154742 || || | || || || || || || | || || || | || || |||||||| Sbjct 5588 TTGCTCTTTCTATTACAGGCATCCTTATAAAGCATATAAGGCATTCCAGTCTCCACTTGA 5529 Query 154743 GTTTCAATAATTGTG--CGAAACAGACTTCGCGCCTCAAC----TTGACAAGTAAATCGA 154796 || ||||| | | ||| | || | || | || || ||| || || Sbjct 5528 CTTGTGATAATAGCCATCCAAAGATCCT--GTGCTTTGACCTTTTTTACA--TATTTCCC 5473 Query 154797 TTTTCGCTCTCATATTGTTCGTACAGTTTTTCAAACTC-TAAACTGTACACGTCCGACAA 154855 || | ||| ||| | |||| ||| ||||| || | | ||| || |||| Sbjct 5472 TTCTGACTC--ATACTTCATATACAATTTATCAAATTCATCTCCCCAACAA-TCAAACAA 5416 Query 154856 ACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCG---TTTTGTTGTACGCGTTT 154912 || || | ||| ||||||||||| |||| |||| || | || || | || Sbjct 5415 TCCAGGGGAATCGTCAGGACACATCAAGCACCA---TTCGCCATTCTCTTCCACCCTCTT 5359 Query 154913 CATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGC 154972 ||| ||||| || || | ||| | |||||| || ||||| | || || | ||| | Sbjct 5358 CATGAACAAGTCTGGAATCCAAAGAGCGTAAAATAAATCTCTAGCTCGTTCTTTTTCCTC 5299 Query 154973 GCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATA 155032 || | || |||||||||||| |||||| |||||||||| ||||||||||||||||| Sbjct 5298 TCCTGTATTCTTCTTTAAATTCAAGAAATCAAATATGTCGGCATGCCACGGCTCTAAATA 5239 Query 155033 TACGGCCATCGCGCC------TTTGCGTTTTCCTCCTTGATCCAC 155071 | |||| || || |||| ||||| ||||||||||| Sbjct 5238 AATGGCCCAGGCCCCGGGTCTTTTG---TTTCCGCCTTGATCCAC 5197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| | ||||| |||||||||||||| || | ||||||||||| | || || ||||| Sbjct 392 GTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATT 333 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || | |||||||| || |||||||||||| || | ||| | || ||| Sbjct 332 GGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCC 273 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234 || |||||||| | || || ||||||||||||||| || Sbjct 272 CAGTTCCACAAATCTGTTGGCGTTTTGTTCCACATGTCGTACTG 229 >seq19288 Length=6598 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||| || |||| || ||||||||||| Sbjct 4279 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTCCAGCTGCTTGCCA 4338 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | |||||||| || || |||||||| || || || || || || ||| Sbjct 4339 GCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC 4398 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || || || || || | || | ||||||||||||||| || Sbjct 4399 ACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTCAATGTC 4458 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 4459 TTGACGAAGATCTGCATCTT 4478 >seq22640 Length=7414 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || ||||| | || | || || || || || |||||||| || | Sbjct 1233 ACCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1292 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || |||||||| ||||| |||| | ||||||||||| || || Sbjct 1293 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGG 1352 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| ||| ||| | || ||| || ||||| Sbjct 1353 AATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCAC 1412 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | || || || || | || || ||||| || |||||| Sbjct 1413 CTCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCATT 1461 >seq36370 Length=18529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 269/411 (65%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 154622 ACTGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTG 154681 |||||| |||||||| || | || | ||||||||| ||||| || || | ||| | || Sbjct 18272 ACTGTACTGCACAATCTCGGAGCTTAGATTACTGCACCGAATAGTACCGATGTTCTGTTG 18213 Query 154682 ATTCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTG 154741 ||| || |||||| ||||||||| | || | || | || ||||||||||| Sbjct 18212 ATTGCTCTTCCGGTTGCAAATGTCTTTGTATAGCATAAATGGCATTCCAGTTTCCACTTG 18153 Query 154742 GGTTTCAATAATTGTGCGAAACAGACTTCGCGC-CTCAACTTGA-CAAGTAAATCGATTT 154799 |||| | || | | | || | || | || |||| | | | | | | Sbjct 18152 ACTTTCTACGATAG--CCATCCACAAATCCTGTGCT----TTGATCTTCTTATTATACCT 18099 Query 154800 TCGCTCTCAT--ATTGTTC--GTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAA 154855 || ||| || || | || ||||||||||||||||| | | | || | || Sbjct 18098 TCCCTCCGATTCATAGCTCAAGTACAGTTTTTCAAACTTTTCTCCCCAGCAATCGAATAA 18039 Query 154856 ACCGGGACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCAT 154915 |||||| || || ||| |||||||| |||| | | || | || || || ||||| Sbjct 18038 TCCGGGAGAGTCGTGGGGGCACATCAAACACCATTCTCCATTCTCTTCCACTCGCTTCAT 17979 Query 154916 AAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCC 154975 |||| ||| || | ||||||||| || ||||||| || | | ||||| || Sbjct 17978 GAACAGATCTGGGATCCACAAAGCATAGCACAAATCTTTGGCTCTGTATTCTTCCTTTCC 17919 Query 154976 CATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTC 155026 | ||| ||| ||||| | |||||||| |||||||||||||| || || Sbjct 17918 GGTATTTTTCTTCAAATTGAGGAAATCATAAATGTCGGCGTGCCAAGGTTC 17868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499376952913840