Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq35853 105 7e-18 seq25828 93.3 4e-14 >seq35853 Length=3953 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||||||||||| |||| | || || ||||||| ||||| || || ||||| || || Sbjct 3856 AAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAA 3797 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| || |||||||| ||||| || || | ||| |||||| | |||||| | || || Sbjct 3796 ATCCTCGGAAACAACGAATCGTTTGAGCCTTACACGTCCAACATCTACAACCGACGAGTT 3737 Query 95194 CTCGCCGGGGAATTCC 95209 | | |||||||||| Sbjct 3736 TTATCAGGGGAATTCC 3721 >seq25828 Length=6072 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||||||||||| |||| | || || ||||||| ||||| || || ||||| || || Sbjct 298 AAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAA 357 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| || |||||||| ||||| || || | ||| || ||| | ||||| | || || Sbjct 358 ATCCTCGGAAACAACGAATCGTTTGAGCCTTACACGTCGAACATCTACAATCGTCGAGTT 417 Query 95194 CTCGCCGGGGAATTCC 95209 | | || ||||||| Sbjct 418 TTGTCTGGAGAATTCC 433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||||||||||| |||| | || || ||||||| ||||| || || ||||| || || Sbjct 130 AAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAA 189 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTC 95171 ||||| || |||||||| ||||| || || | ||| || Sbjct 190 ATCCTCGGAAACAACGAATCGTTTGAGCCTTACACGTC 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494457991260560