Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25828 131 2e-25 >seq25828 Length=6072 Score = 131 bits (144), Expect = 2e-25 Identities = 306/456 (67%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 153308 TTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG-AA 153366 ||| ||||| || || || || || || || || |||||| || |||| || | || Sbjct 5979 TTCACAGCTCGCTTCCAGGGCCCCGTAATAAATAGTTTCGAAAATCTGTTGGTTCAATAA 5920 Query 153367 CGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCT 153426 | || || ||| |||| ||||| ||||| | || ||| | |||||||| |||| |||| Sbjct 5919 CTGC-GCCTCTGCGCTTTCGTAGGGCATTCTCATCAGGATGAAGGCGTCTGCCAAGCCCT 5861 Query 153427 GGATACCGACGCCGATGGGTCGATGCTTC----TCGTTGCTGCGCCTCGCGCTC-GCTAT 153481 ||| ||| | ||||| || ||||| || ||| || | |||| ||| | || Sbjct 5860 GGACACCAATTCCGATCGGACGATGTCTCATATTCGATGTTT----TCGC-CTCTGGTAC 5806 Query 153482 GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGC 153541 |||||| | |||| ||| || | || || || || | |||| ||| || | | Sbjct 5805 GGGATAATAATTGATATCAATCACCTTATTTAGATTCCTTGTCACCGTTTTGGTCACTTC 5746 Query 153542 CTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAAT 153601 ||| | ||||| ||||| || || | || | ||| || | |||| ||| || Sbjct 5745 CTTCAATTTCTTAAAATCGTACTTCTTCTCAGCTACGTTCACAAACATGTTCAGGGCGAT 5686 Query 153602 AGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCA 153661 || ||||| |||||||| ||| ||| || | |||||| | ||| ||||| | ||| Sbjct 5685 CGATGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTATTCCACAATCTCTGTGCA 5626 Query 153662 GAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTC 153721 || || |||||| || ||| | ||| ||||||||||| || | ||| || || || Sbjct 5625 CAGATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTATTACAGGCATC 5566 Query 153722 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 || | ||||| || || || ||||| ||||| Sbjct 5565 CTTATAAAGCATATAAGGCATTCCAGTCTCCACTTG 5530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495996366133920