Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq22640 125 7e-24 seq19288 104 2e-17 seq35853 84.2 2e-11 seq25828 82.4 7e-11 >seq22640 Length=7414 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | |||||| || | || ||||| || || || ||||| ||| | Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| | |||||||||||||| || || || Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGA 1353 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||||| | ||| || Sbjct 1354 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACC 1413 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || || || || || || || |||||||| Sbjct 1414 TCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCAT 1460 >seq19288 Length=6598 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || ||||| ||| || || || || || Sbjct 4266 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCGTCCTC 4325 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| | ||||| ||||||||||| || || || |||||||||||| Sbjct 4326 CAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 4385 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | |||| ||||| | |||||| || | ||| | || || Sbjct 4386 GATCTTGGCCTTCACATTCTCGATAGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 4445 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || || || |||||||| Sbjct 4446 GCCGGTCAATGTCTTGACGAAGATCTGCAT 4475 >seq35853 Length=3953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGC 146124 || |||||||| || || || | | ||| || | || | |||| ||| | ||| Sbjct 3711 TTCACCACCTGGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGC 3770 Query 146125 TCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACC 146184 || ||||| |||||||| ||||| || || || || | |||||| ||||| |||| | Sbjct 3771 TCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAAC 3830 Query 146185 AGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCAC 146244 || | |||||||||||| |||||| || || || || || | | ||| |||||| Sbjct 3831 AGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCCCAGTTCCAC 3890 Query 146245 AAAT 146248 |||| Sbjct 3891 AAAT 3894 >seq25828 Length=6072 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| | ||||| ||||| |||||||| ||||| || || || || | |||||| ||||| Sbjct 224 GTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATT 165 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGAC 146235 |||| ||| | |||||||||||| |||||| || || || || || | | | Sbjct 164 GGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCC 105 Query 146236 CAATTCCACAAAT 146248 || |||||||||| Sbjct 104 CAGTTCCACAAAT 92 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| | ||||| ||||| |||||||| ||||| || || || || | |||||| ||||| Sbjct 392 GTGTAAGGCTCAAACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATT 333 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGAC 146235 |||| ||| | |||||||||||| |||||| || || || || || | | | Sbjct 332 GGGGCCAACAGAAGAGAGTTTCTCACACCGTGTTTTGCGATTTTCTCTTTCAGCTCAGCC 273 Query 146236 CAATTCCACAAAT 146248 || |||||||||| Sbjct 272 CAGTTCCACAAAT 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475245895908640