Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq35853 122 8e-23 seq25828 100 3e-16 seq22640 89.7 5e-13 >seq35853 Length=3953 Score = 122 bits (134), Expect = 8e-23 Identities = 326/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 |||||| || | ||||| || || |||| ||||| || || |||| |||||||| Sbjct 3853 CACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTTCCACAGCTCAAATC 3794 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTA 124298 | |||||||||||||| || ||||| | ||| ||| | ||| |||||||| ||| Sbjct 3793 CTCGGAAACAACGAATCGTTTGAGCCTTACACGTCCAACATCTACAACCGACGAGTTTTA 3734 Query 124299 GCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTG 124358 | || || || || ||| | |||| ||||||| || | |||||| | | | ||| Sbjct 3733 TCAGGGGAATTCCAGGTGGTGAATCGTCATTTGCTGAAAGACTTGACCGAACTGGAATTG 3674 Query 124359 TACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCT 124418 | |||| ||||| ||| |||| ||||| | ||| | | || || | Sbjct 3673 TGGAATGATGACATGAAGAACAAAATCATTGCACACAATGGATCCATTCAAAATATAGAG 3614 Query 124419 TCGATTCCGGAACAC-GTCAAGCAACTGTACAAAACCGTGTGGGAAATGA-AAAATAAAC 124476 ||||| ||| || || ||| || || ||||| ||||||||||| | | |||| Sbjct 3613 GAAATTCCTGAAGACATTCGAGC-TCTTTATAAAACTGTGTGGGAAATTAGTGTAAAAAC 3555 Query 124477 GATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACG 124536 | ||| | ||||| | || ||||| || | | |||||||| || ||||||||| Sbjct 3554 TA-CAATCAACATGGCTGCTGATCGAGGAGCCTTTATTGATCAAAGCCAGTCTTTTAACA 3496 Query 124537 TGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCA 124596 | || || | ||| | |||| | || || ||| | | | |||| Sbjct 3495 TTCACGTCGCTGCACCGAATTACGGAAAGCTAACTTCGATTCACTTCTATGGATGGAAAC 3436 Query 124597 GCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAAT 124656 ||||| || ||||| |||||||| ||| |||| ||||| || | | || ||||||| Sbjct 3435 TGGGACTGAAGACGGGAATGTATTATTTACGAACGAAACCTGCTGTAAACGCAATTCAAT 3376 Query 124657 TTACCGTCGACAA 124669 |||| ||||| || Sbjct 3375 TTACAGTCGATAA 3363 >seq25828 Length=6072 Score = 100 bits (110), Expect = 3e-16 Identities = 166/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA 124166 ||||||||||||||||| || || ||| |||||||| ||||| | | ||| | Sbjct 229 CAGTACGACATGTGGAACAAAACGCCAACAGATTTGTGGAACTGGGCTGAGCTGAAAGA- 287 Query 124167 CGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAA 124224 | | |||| | |||||| || | ||||| || || |||| ||||| || || Sbjct 288 -GAAAATCGCAAAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGCCAACCGCTT 346 Query 124225 CCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACG 124284 |||| |||||||| | |||||||||||||| || ||||| | ||| || | ||| Sbjct 347 CCACAGCTCAAATCCTCGGAAACAACGAATCGTTTGAGCCTTACACGTCGAACATCTACA 406 Query 124285 TGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTT 124342 || ||||| || | || || || || ||| | |||| ||||||| || | ||||| Sbjct 407 ATCGTCGAGTTTTGTCTGGAGAATTCCAGGTGGTGAATCGTCATTTGCTGAAAGACTT 464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 124098 GGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTT 124157 |||||| ||||||||||||||||||| || || ||| |||||||| ||||| | Sbjct 52 GGTATTCTGCAGTACGACATGTGGAACAAAACGCCAACAGATTTGTGGAACTGGGCTGAG 111 Query 124158 TTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGC 124215 | ||| | | | |||| | |||||| || | ||||| || || |||| |||| Sbjct 112 CTGAAAGA--GAAAATCGCAAAACACGGTGTGAGAAACTCTCTTCTGTTGGCCCCAATGC 169 Query 124216 CGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270 | || || |||| |||||||| | |||||||||||||| || ||||| | ||| Sbjct 170 CAACCGCTTCCACAGCTCAAATCCTCGGAAACAACGAATCGTTTGAGCCTTACAC 224 >seq22640 Length=7414 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| | || || || || ||||| ||||| || || ||| Sbjct 1234 CCACCGCGGAGTCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1293 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || ||||| ||| | |||||||| ||||||||||| ||| Sbjct 1294 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGA 1353 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || || || |||| || | ||||| || | ||| || Sbjct 1354 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTGTCAGAGGGCTCCACC 1413 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||||| || ||||| || || || || || ||||| Sbjct 1414 TCGAGGGTGATAGTTTTCCCCGTTAGGGTCTTCACGAAGATCTGCAT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451760892384560