Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq25027 152 8e-32 seq35853 109 9e-19 >seq25027 Length=9736 Score = 152 bits (168), Expect = 8e-32 Identities = 560/865 (65%), Gaps = 24/865 (3%) Strand=Plus/Minus Query 159625 GAACTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATAT 159684 |||||| | ||||| || ||||||||||| || || ||||| ||||| | || || Sbjct 6296 GAACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGAT 6237 Query 159685 TGATTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGC 159744 | |||||||| ||| || || | || ||| ||| | ||| || || | Sbjct 6236 AAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCCCAGCTCCAC 6177 Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAG 159804 || | | ||| || |||||||| ||||| ||||| | | ||||| || || | Sbjct 6176 TAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGAT 6117 Query 159805 CA-GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 || | ||| | || || || || | || || |||| ||||| | || ||||| | Sbjct 6116 CATGTCTA-CTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGA 6058 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTT--GCCCAAAATGTGGTCCTTAAACAGGAG 159921 || | | ||||| | |||||| || | || ||| || |||| ||| Sbjct 6057 TGATTTCAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGT-----TTGAACATGAG 6003 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| || || || ||||||||||| ||||| || || || | || ||||| | | | | Sbjct 6002 GCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAA 5943 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAA 160041 || ||||| | || || || |||||||| || | ||||| || || ||||| Sbjct 5942 ACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAAA 5883 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| || ||||| || ||||| || | | | || ||||| || || ||| Sbjct 5882 GATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTA---TCACT 5826 Query 160102 GG---TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT-CGACGG 160157 || |||| | |||||| || |||||||| | || |||| ||| | | | || Sbjct 5825 GGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCA-GCGTTTCAATGG 5767 Query 160158 CGTTAAACA--ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGA 160215 |||| |||| | || || |||| |||| || ||| |||||| | Sbjct 5766 CGTTGAACAGAAACTCTCT--CTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCT 5709 Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 ||||||||| | ||| ||||| || || || |||||||| |||||| | ||||| Sbjct 5708 GTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTC 5649 Query 160276 CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 |||||||||||| |||||| || ||| || |||| || | ||||| Sbjct 5648 GGTGACCTGCACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACT 5589 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTT 160395 ||| ||||| || || | ||| || || |||||||| ||||| | | | | | |||| Sbjct 5588 GGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTC-ACATGGCT--GCATCTT 5532 Query 160396 TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTG 160455 ||||| | | || ||||| | ||| || ||||||||| | |||| || ||||| Sbjct 5531 CTCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTC 5472 Query 160456 AGCAGTTTTGTACATGGCCCAGATG 160480 ||| ||||||| | | |||| ||| Sbjct 5471 AGCCTTTTTGTAAAAGTCCCAAATG 5447 >seq35853 Length=3953 Score = 109 bits (120), Expect = 9e-19 Identities = 326/498 (65%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||| || || || || ||||| ||||| || ||||| | ||| | ||| ||||| || Sbjct 3362 CTTATCGACTGTAAATTGAATTGCGTTTACAGCAGGTTTCGTTCGTAAATAATACATTCC 3421 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||| | ||| || || | ||| || |||| || || | || || Sbjct 3422 CGTCTTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGG 3481 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 | || | ||||||||| | |||||||||||| || || |||||| || ||||| || | Sbjct 3482 TGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAAT-AAAGGCTCCTCGATCAGCAG 3540 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| ||||| | || || ||| |||||||| || || | | ||| ||| Sbjct 3541 CCATGTTGATTGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGT 3600 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 || ||| | || | | | | || || || || |||| || || | | | || || Sbjct 3601 CTTCAGGAATTTCCT-CTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTC 3659 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | || || ||||| ||| | ||| || || || || | || | | | Sbjct 3660 ATGTCATCATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACC 3719 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || || || | || | |||| || | | |||| ||| | || || |||| Sbjct 3720 TGGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGAT 3779 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 |||||||| |||| || ||||| ||| || || ||||| || |||| || || ||| Sbjct 3780 TCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCATTGGGGCCAACAGAAGAGAG 3839 Query 204317 TTGCGCACACCGTATTTT 204334 || | |||||||| |||| Sbjct 3840 TTTCTCACACCGTGTTTT 3857 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || || || ||||| || ||||| |||||||| | || | ||||||||| || Sbjct 559 TTGTCGACTGTAAATTGAATCGCATTCACTGCAGGCCTTATCCTTAAATAGTACATTCCC 500 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| || ||| | ||| || || | ||| || |||| || || | || || Sbjct 499 GTCTTCAGTCCCAGTTTCCAACCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGGT 440 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 | || | ||||||||| | |||||||||||| || || |||||| || ||||| || || Sbjct 439 GCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAAT-AAAGGCTCCTCGATCAGCAGC 381 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||| ||||| | || || ||| |||||||| || || Sbjct 380 CATGTTGATGGTAGTTTTTACACTAATTTCCCACACAGTTTT 339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794728937176160