Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25027 336 2e-87 seq19288 145 8e-30 seq22640 138 1e-27 >seq25027 Length=9736 Score = 336 bits (372), Expect = 2e-87 Identities = 656/966 (68%), Gaps = 11/966 (1%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCT------TGGCAAACATCACGCCAAAT 132603 || ||||| ||||||| || || || ||||| ||| |||| || || || Sbjct 6349 TAGAAGTCGGCATCCAGGGTGAAAACGTTGTCCTGACCGTTGG---ACATGACTCCGAAC 6293 Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| ||||| || ||||| ||||| || ||||| || || ||||| | || || | | Sbjct 6292 TTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTCGAGCGAGATAAAC 6233 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| |||| || || || | ||||||||| || | | ||| || || || Sbjct 6232 TCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCCCAGCTCCACTAGA 6173 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | ||| || || || || ||||| ||||| || ||| || | || | || Sbjct 6172 AGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTTCATGCCGATCATG 6113 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 || || || || || || | || || || ||| | || || || || |||| Sbjct 6112 TCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGCTTCACGGATGATT 6053 Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 || ||| || || ||||| |||||||| || |||||||| | |||||| || Sbjct 6052 TCAATAATTCGTTCCTTTGTCGGCTTCTGCACCAAGTGTTTGAACATGAGGCAAGCGAAA 5993 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 || || |||| || ||||| | ||||| ||||| ||| ||| ||||| || ||||| Sbjct 5992 TCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGAAGGTCAAACCAGGCATT 5933 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 || || ||||| || |||||||| || | ||| || || || || |||| ||| || Sbjct 5932 AGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCACTGAAAAAGATGCCTTCC 5873 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 || || || ||||| | || || || || || | || | | ||||||||||| | Sbjct 5872 ACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTATCACTGGCGATCCAATTC 5813 Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 | ||||| || ||||| | || || || |||| |||||| |||||||| |||| | Sbjct 5812 AAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAATGGCGTTGAACAGAAAC 5753 Query 133144 AGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 | |||| | | | | | ||| || | || || | |||||||| |||||| Sbjct 5752 TCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGCTGTACATTTCAGAGTGT 5693 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 || |||||||| ||||| ||||| ||||| ||| |||| |||||| |||||||| || Sbjct 5692 ACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCTCGGTGACCTGCACCTCC 5633 Query 133264 TGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 ||| ||| || || |||| || || || || || ||||| ||||| || |||||||| Sbjct 5632 TGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCA 5573 Query 133324 AGCACGTGCTTGATGAAATGGCGCTC-GTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 ||||| || |||||||| | ||| || | | || |||||| ||| | |||| Sbjct 5572 AGCACATGGGAAATGAAATGCCTCTCACATGGC-TGCATCTTCTCCCAATCGGCCATGTC 5514 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT 133442 || |||| ||||||||| || || ||||| || || ||||| || |||||||| | Sbjct 5513 TTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCAGCCTTTTTGTAAAAGTC 5454 Query 133443 CCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAG 133502 ||| ||||| || || || || || ||||| |||| | |||||| || ||| || Sbjct 5453 CCAAATGTCTTTGTACTGAATTGGGAATATCACGAACCTCCTGGGGTTCTCTTTCAAAAG 5394 Query 133503 CGGCTC 133508 ||| || Sbjct 5393 CGGTTC 5388 >seq19288 Length=6598 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | || ||||| ||||||||| | || |||||| || Sbjct 4478 AAGATGCAGATCTTCGTCAAGACATTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCC 4419 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | || | || |||| ||||| |||||||||||| | || Sbjct 4418 TCCGACACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGAT 4359 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | |||| ||| ||||| |||||||| |||| || ||||| ||||||| Sbjct 4358 CAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGACGGCCGAACCCTGTCCGACTAC 4299 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || || |||||||| ||| |||| || || Sbjct 4298 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTGAGGGGAGG 4249 >seq22640 Length=7414 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || ||||| ||||| |||||| |||| || ||| || | Sbjct 1461 AATGCAGATCTTCGTGAAGACCCTAACGGGGAAAACTATCACCCTCGAGGTGGAGCCCTC 1402 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | || |||| ||||| |||||||||||| | ||||| Sbjct 1401 TGACACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1342 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || || |||||||| || | |||||||| ||||||||| Sbjct 1341 GCAGCGATTGATTTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 1282 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||||||| || Sbjct 1281 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCG 1246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499904669866240