Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq32567 205 4e-47 seq26907 84.2 9e-11 seq25027 84.2 9e-11 >seq32567 Length=6805 Score = 205 bits (226), Expect = 4e-47 Identities = 816/1266 (64%), Gaps = 39/1266 (3%) Strand=Plus/Plus Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 ||| || || ||||| || |||||||| || |||||||| ||||| || || || | Sbjct 2817 TCCCGAGGAGATTTCTTCGATGGTTCTGACCAAAATGAAGGAAACTGCCGAGGCTTACTT 2876 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | || || ||||| || |||| || |||||||| |||| || | || || Sbjct 2877 GGGAAGGACTGTAACAGATGCCGTCGTTACAGTCCCCGCTTACTTCAGCGACTCCCAGCG 2936 Query 451363 GCAAGCAACTAAAGATGCAGGA--CATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420 || || || || || || ||| ||||| |||| ||||| |||||||||||||| || Sbjct 2937 TCAGGCTACGAAGGACGCTGGAGTCATAT--CTGGATTAAACGTTCTTCGAATTATCAAC 2994 Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaa 451480 || || ||||| || || | || ||||| | ||| || || | || | ||| ||| Sbjct 2995 GAGCCAACAGCTGCAGCCATTGCTTATGGTTT-GGACAAG--AAGGGAATCGGAGAGAAA 3051 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | || | || ||| |||| || ||||| |||| |||| | | || |||||| Sbjct 3052 AACGTGTTGATCTTCGATCTTGGAGGTGGAACCTTTGATGTTTCTATCTTGTCCATTGAA 3111 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | ||||| || ||| | ||| ||| || || ||| |||| || || || || Sbjct 3112 GACGGTATCTTTGAGGTGAAGTCTACCGCTGGGGACACCCATTTAGGTGGAGAGGACTTT 3171 Query 451601 GATAATGCAATTGTGGAA----TGGTTGAAAACTGATGTTCAACGAAAACTAAAAGTAGA 451656 |||||| ||| || | | ||| || | | | ||| | || | || ||| Sbjct 3172 GATAATAGAATGGTCAATCATTTCGTTCAAGAGT----TCCAAAGGAAGCACAAGAAAGA 3227 Query 451657 TATTTCTACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAAT 451716 || || | || | | ||| ||||||||||| | || | |||| ||||| | Sbjct 3228 CCTTACTTCGAATAAGAGAGCTCTTAGACGTCTAAGGACTGCCTGTGAAAGGGCTAAGAG 3287 Query 451717 TACACT--CAGT-TCAACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAAT 451773 || || ||| || | ||| ||| | | | || || ||| |||| ||||| Sbjct 3288 AACCCTATCAGCATCTTCCCAAGCTAACA---TCGAGATAGACTCCTTATTTGAAGGAAT 3344 Query 451774 GGATTATGCTACTACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGC 451833 || | | ||| | |||| | |||| |||||| | | || | ||| Sbjct 3345 TGACTTTTATACCTCGATTACAAGGGCTAGGTTTGAAGAATTAAACTCTGACCTGTTTAG 3404 Query 451834 ACGGGTAATGAAACCTGTTGATCAAG--TATTACATGATTCTAAAATTAGTAAAGATAAA 451891 | | ||| ||||||| || ||| | ||| ||| |||| || ||| | | Sbjct 3405 AAGTACCATGGAACCTGT-GACTAAGGCTCTTAGG-GATGCTAAGATGGATAAGGGGCAG 3462 Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 || |||||||||| | || || || ||||| |||| || || |||| || | | Sbjct 3463 GTTAATGAAATTGTCTTAGTTGGTGGATCTACTAGAATCCCAAAGGTTCA-GAAAC-TAC 3520 Query 451952 TCTTCTTATTTTGGA--GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTG 452009 || ||| | | || || | || ||| | ||||| || |||||||| | Sbjct 3521 TCCAAGAATTCTTCAATGGTAAGGATCTTAACAAGTCTATCAATCCCGACGAAGCTGTGG 3580 Query 452010 CATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAG 452066 | || || ||||||||||| || || ||||| || |||| | |||| | | Sbjct 3581 CTTACGGAGCTGCAGTTCAGGCTGCAATTCTCCATGG---AGATCAGTCTGAACAGGTTC 3637 Query 452067 GAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAA 452126 ||| |||| || | ||||| || ||||||||||| ||| |||| || ||||| ||| Sbjct 3638 AAGACCTTCTTTTGTTGGATGTTACTCCTCTATCTCTGGGAATTGAGACTGCTGGAGGAG 3697 Query 452127 TGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTA 452186 | |||||| |||||| ||| || ||| | || || ||| ||| |||||| |||| Sbjct 3698 TTATGACTGTTTTAATCAAAAGAAATACTACAATCCCCACGAAACAGACTCAAACTTTTA 3757 Query 452187 GTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAA 452246 || ||||||||||| || || ||||||||| |||||||||||| | || | Sbjct 3758 CCACTTACTCCGATAACCAACCTGGAGTTCTTATTCAAGTCTTTGAAGGAGAAAGAGCTA 3817 Query 452247 TGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA--AACATTCCTCCTATGCC 452304 ||||| || || ||| || ||| |||| | || | |||||||| || Sbjct 3818 TGACAAAGGACAACAATCTCCTCGGAAAATT--CGAATTGAGTGGAATTCCTCCAGCTCC 3875 Query 452305 AAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGT 452364 || ||| ||||||||| ||| | || | || | ||||| ||||| || | || || Sbjct 3876 CAGAGGAGTTCCTCAAATCGAAGTCACTTTCGACATCGATGCTAATGGAATCATGAACGT 3935 Query 452365 GAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAA 452424 | || | ||||| || ||||| | | || || || || || ||||| || Sbjct 3936 TACAGCTATAGAAAAGTCTACTGGACGTGAAAATAAGATCACGATCACCAATGACAAGGG 3995 Query 452425 CCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGA 452484 || | || || || ||||| |||||| ||||||| ||||||| || |||| Sbjct 3996 ACGACTGAGCAAGGAGGACATTGATCGAATGGTGAATGAAGCCGAAAAATACAGAAATGA 4055 Query 452485 TGATGA 452490 ||||| Sbjct 4056 AGATGA 4061 >seq26907 Length=2622 Score = 84.2 bits (92), Expect = 9e-11 Identities = 184/273 (67%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || ||||| || ||||| ||||| || || || || || || ||||| ||| ||| Sbjct 2184 ACCGTCCCCGCCTACTTCAACGATGCCCAGCGACAGGCCACCAAGGATGCCGGAGTTATC 2125 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || ||||| || || | | || || || || || || || || || | || |||||| Sbjct 2124 GCCGGTTTGAACGTGATGAGGATCATCAACGAGCCCACTGCCGCCGCCATCGCCTATGGA 2065 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | ||| || ||| | | ||| || || | || ||||| ||||| || || || Sbjct 2064 TT-GGACAAG---AAGGAC--GGAGAGAAGAACGTGTTGGTATTCGATTTGGGCGGTGGT 2011 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| |||| || | || | || || |||| || ||||| || ||| ||||| Sbjct 2010 ACTTTTGATGTCTCCCTCCTCACCATCGACAATGGAGTGTTTGAGGTCGTGGCCACCAAC 1951 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || || || || | |||||||||||| | ||| Sbjct 1950 GGAGACACCCACTTGGGAGGTGAAGATTTCGAT 1918 >seq25027 Length=9736 Score = 84.2 bits (92), Expect = 9e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 497397 GAAGGATTAttttttagtggaagtttttgtgctattttttGGTTaaaaaataaaaaTATA 497456 ||||| | ||||| |||||||| ||| |||| |||||| |||| || | | || Sbjct 5874 GAAGGCATCTTTTTCAGTGGAAGCTTTGCCTCTATCTTTTGGCTAAAGAAACGAGGTCTA 5933 Query 497457 ATGCCTGGTTTAATCTCATCAAATGAATTAATTGCACGGGATGAAGGAATGCATTGTGAT 497516 ||||||||||| | || || |||||| | ||| |||| || |||||| |||| |||||| Sbjct 5934 ATGCCTGGTTTGACCTTCTCCAATGAACTGATTTCACGAGACGAAGGACTGCACTGTGAT 5993 Query 497517 T 497517 | Sbjct 5994 T 5994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974632788427688