Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq25828 138 1e-27 seq4345 93.3 5e-14 >seq25828 Length=6072 Score = 138 bits (152), Expect = 1e-27 Identities = 382/576 (66%), Gaps = 20/576 (3%) Strand=Plus/Plus Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 ||| | || | |||||| ||||||||||| | ||||||||||| || || |||| |||| Sbjct 5320 GATTTATTTTACGCTCTTTGGATTCCAGACTTGTTCATGAAGAGGGTGGAAGAGAATGGC 5379 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 | |||| | | ||||| ||| | | || || | | ||| ||| || || Sbjct 5380 GAATGGTGCTTGATGTGTCCTGACGATTCCCCTGGATTGTTTGATTGTTGGGGAGATGAA 5439 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC-TGCGAC---GGTGCC 112264 ||||| | || | ||||| ||| |||| ||| | || | ||| Sbjct 5440 TTTGATAAATTGTATATGAAGTATGAGTCAGAA----GGGAAATATGTAAAAAAGGTCAA 5495 Query 112265 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324 ||| ||| | |||| |||||| ||| |||| |||||||| | || ||||| Sbjct 5496 AGCACAGGATCTTTGGATGGCTATTATCACAAGTCAAGTGGAGACTGGAATGCCTTATAT 5555 Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-TTGGGTGTGATCAA-- 112381 |||||| || || |||||||| |||||| ||||| ||||| | || | || | Sbjct 5556 GCTTTATAAGGATGCCTGTAATAGAAAGAGCAATCAGCAGAATATCGGCACTATTCGATG 5615 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG--ACAAAGATGAGACGGCTGTG 112439 ||| || || || ||||| || ||||| ||||| |||||||||| |||||| Sbjct 5616 CAGT---AATCTGTGCACAGAGATTGTGGAA--TACAGCTCCAAAGATGAGGTGGCTGTC 5670 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 |||||||| ||||| ||||| || || || |||| | || |||| | ||| Sbjct 5671 TGTAACCTGGCATCGATCGCCCTGAACATGTTTGTGAACGTAGCTGAGAAGAAGTACGAT 5730 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | | ||| | | ||||| || ||||| || |||| || ||||| | || |||||| Sbjct 5731 TTTAAGAAATTGAAGGAAGTGACCAAAACGGTGACAAGGAATCTAAATAAGGTGATTGAT 5790 Query 112560 AGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 | |||| ||| ||||| ||| || | ||| ||||||||||| ||||| || || Sbjct 5791 ATCAATTATTATCCCGTACCAGA-GGCGAAAACATCGAATATGAGACATCGTCCGATCGG 5849 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 | |||||||| || | || || | ||||| || Sbjct 5850 AATTGGTGTCCAGGGCTTGGCAGACGCCTTCATCCT 5885 >seq4345 Length=10194 Score = 93.3 bits (102), Expect = 5e-14 Identities = 247/370 (67%), Gaps = 12/370 (3%) Strand=Plus/Minus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 ||||||| || || ||||| | || ||||| | ||||| || | |||| ||||| Sbjct 5806 AACCCGTTCCAATGCCCTCCGCGCCATTCACCAACACCATTGGAATAATTGGAATGTACC 5747 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | | |||||||| | | ||| || | |||||| | | ||| ||||| || | Sbjct 5746 ACTGCGGCTCAATCTTGTGGTTATCCTCGTACAAATACGTCAAAATGGGATCGTCCAGGG 5687 Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 ||| |||||| | | ||| | || |||| || ||||| || | | | || | Sbjct 5686 GATGGAAGATCATCCTGGCCAACTGCGTCAGCTGCGTGAAGATGTAACGAG---GCGAGG 5630 Query 176019 CA---TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075 || ||||| || || | | ||| || |||||| ||| | |||| || ||||||| Sbjct 5629 CAGAGTCCTTGCCTCCGTTCAAACGGGTTCCAAACGAACCGCTCGGCAGCAGCAGATTGA 5570 Query 176076 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACT- 176134 | ||||| |||| | | | | |||||| |||| ||||| | || | || |||| Sbjct 5569 TGTTGTTGCTGCCCACGAAATTCTGCGCCAAATTGATGATCGTCTG-GC-ACAGGGACTG 5512 Query 176135 -TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCA 176192 || |||||||||||| | | | | || || || |||| |||||||||||| |||| Sbjct 5511 CTCCCCGTGGTGGTACTCGGACGTGTGCGCCACCAAA-CCGCTCAACTGCGCCACCTTCA 5453 Query 176193 TCTCATCCTT 176202 |||| | ||| Sbjct 5452 TCTCGTTCTT 5443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620409635517920