Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq21176 120 4e-22 >seq21176 Length=21820 Score = 120 bits (132), Expect = 4e-22 Identities = 355/540 (66%), Gaps = 12/540 (2%) Strand=Plus/Plus Query 154596 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 154655 ||||| || || || | |||| || || || ||||| ||| || | || || || Sbjct 11227 TGTGAGATTACTGGTTATGATAGAATCTCTTTCCAACCCAACAGCGGCGCTCAAGGGGAA 11286 Query 154656 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 154715 || || ||||| ||| || | || || ||| ||| |||||| | || ||| | Sbjct 11287 TACGCGGGACTTCGAGCGATTCGAGGATTCCACGAAGCGAAAGGAGAACACAATCGAACT 11346 Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775 | ||| | || || || || ||||||||||| |||||| ||| |||||||| Sbjct 11347 ATTTGTCTAATTCCCATCTCTGCTCATGGAACTAACCCTGCTTCAGCTCAAATGGCAGGA 11406 Query 154776 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAG 154835 ||||| || || | |||| | | ||||| | |||||| || | || || Sbjct 11407 ATGAAGGTACAAGCTATCAAAATTTGCAACGATGGAAGCATAGATATGGTCCA-CTTGA- 11464 Query 154836 AAGAAAGCAATCATGAATACATTT--GAACTGT--CATGTATTATGATTACATACCCATC 154891 | |||| ||| | | ||||| ||| ||| | || | ||||| || |||||| Sbjct 11465 AGGAAA--AATTAGAACAACATTCCAGAAATGTTTCCTGCTTAATGATCACTTACCCAAG 11522 Query 154892 TACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATC--GTTCATGACAAT 154949 ||| |||| ||||| || | | | | | ||||| | ||| |||||| | || Sbjct 11523 TACTAATGGAGTATTCGAGGAGACCGT--GGCTGATATTTGCGATATGGTTCATCAGCAT 11580 Query 154950 GGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCA 155009 || ||||| || || ||||||||||| || | || || || || ||||| || Sbjct 11581 GGAGGTCAAGTTTACCTTGATGGAGCTAACATGAACGCCCAAGTGGGACTTTGTCGTCCT 11640 Query 155010 TGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACAT 155069 | || ||||| ||||| | ||| |||| || || ||||| ||||||||||| || Sbjct 11641 GGAGACTATGGAAGTGATGTTTCGCATTTAAATTTGCACAAAACTTTCTGTATTCCTCAC 11700 Query 155070 GGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTTGTA 155129 ||||| |||||||| || | |||||||| || || ||||||| | |||||| || Sbjct 11701 GGAGGAGGAGGTCCAGGAATGGGTCCTATTGGAGTTAAGGAACATCTAGCTCCATTTTTA 11760 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 153262 TTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAA 153321 |||| |||||| | ||| ||| ||||||||||||||| |||||||| | || ||| Sbjct 7481 TTGAAAATCCTGGATGGACCACGCAATACACTCCCTATCAACCTGAGATAGCCCAAGGAC 7540 Query 153322 GATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAG 153381 | |||||| |||| || || ||||| || | || | ||| | ||||| || || | Sbjct 7541 GGTTGGAATCTTTGTTGAACTACCAGACTTTGGTCTCTGAATTAACAGGTTTGGACATTG 7600 Query 153382 CAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | ||||| ||| |||| ||||||| ||| || || |||||||| ||| Sbjct 7601 CCAACGCCTCTTTATTGGATGAAGGAACAGCTGCCGCAGAAGCTATG 7647 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 155360 AGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTG 155419 ||||| ||||| || || || | ||||| |||||||||||||| || || | || || Sbjct 12060 AGCAGTTGATATTGCCAAAAGGTTGATGGATTATGGATTCCATGCCCCAACGATGTCATG 12119 Query 155420 GCCTGTGTTAGGAACTATGATGGTAGAACCCACAGAGTCTGAG 155462 |||||| ||||||| | ||| | ||||||||||| |||||| Sbjct 12120 GCCTGTTGCAGGAACTCTCATGATTGAACCCACAGAATCTGAG 12162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578902298498240