Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq21176 120 4e-22 >seq21176 Length=21820 Score = 120 bits (132), Expect = 4e-22 Identities = 355/540 (66%), Gaps = 12/540 (2%) Strand=Plus/Plus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| || || || | |||| || || || ||||| ||| || | || || || Sbjct 11227 TGTGAGATTACTGGTTATGATAGAATCTCTTTCCAACCCAACAGCGGCGCTCAAGGGGAA 11286 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAAT 159390 || || ||||| ||| || | || || ||| ||| |||||| | || ||| | Sbjct 11287 TACGCGGGACTTCGAGCGATTCGAGGATTCCACGAAGCGAAAGGAGAACACAATCGAACT 11346 Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450 | ||| | || || || || ||||||||||| ||||| ||||| |||||||| Sbjct 11347 ATTTGTCTAATTCCCATCTCTGCTCATGGAACTAACCCTGCTTCAGCTCAAATGGCAGGA 11406 Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAG 159510 ||||| || || | |||| | | ||||| | |||||| || | || || Sbjct 11407 ATGAAGGTACAAGCTATCAAAATTTGCAACGATGGAAGCATAGATATGGTCCA-CTTGA- 11464 Query 159511 AAGAAAGCAATCATGAATACATTT--GAACTGT--CATGTATTATGATTACATATCCATC 159566 | |||| ||| | | ||||| ||| ||| | || | ||||| || || ||| Sbjct 11465 AGGAAA--AATTAGAACAACATTCCAGAAATGTTTCCTGCTTAATGATCACTTACCCAAG 11522 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATT--GTTCATGAGAAT 159624 ||| |||| ||||| || | | | | | ||||| | ||| |||||| || || Sbjct 11523 TACTAATGGAGTATTCGAGGAGACCGT--GGCTGATATTTGCGATATGGTTCATCAGCAT 11580 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCA 159684 || ||||| || || |||||||| || || | || || || || || || || Sbjct 11581 GGAGGTCAAGTTTACCTTGATGGAGCTAACATGAACGCCCAAGTGGGACTTTGTCGTCCT 11640 Query 159685 TGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACAT 159744 | |||||||| ||||| | ||| |||| || || || || ||||||||||| || Sbjct 11641 GGAGACTATGGAAGTGATGTTTCGCATTTAAATTTGCACAAAACTTTCTGTATTCCTCAC 11700 Query 159745 GGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTTGTA 159804 ||||| |||||||| || | ||||||||||| || ||||||| | |||||| || Sbjct 11701 GGAGGAGGAGGTCCAGGAATGGGTCCTATTGGAGTTAAGGAACATCTAGCTCCATTTTTA 11760 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 157937 TTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAA 157996 |||| |||||| | ||| ||| ||||||||||||||| |||||||| | || ||| Sbjct 7481 TTGAAAATCCTGGATGGACCACGCAATACACTCCCTATCAACCTGAGATAGCCCAAGGAC 7540 Query 157997 GATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAG 158056 | |||||| |||| || || ||||| || | || | ||| | ||||| | || | Sbjct 7541 GGTTGGAATCTTTGTTGAACTACCAGACTTTGGTCTCTGAATTAACAGGTTTGGACATTG 7600 Query 158057 CAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | ||||| ||| |||| ||||||| ||| || || |||||||| ||| Sbjct 7601 CCAACGCCTCTTTATTGGATGAAGGAACAGCTGCCGCAGAAGCTATG 7647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 160035 AGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTG 160094 ||||| ||||| || || || | ||||| |||||||||||||| || || | || || Sbjct 12060 AGCAGTTGATATTGCCAAAAGGTTGATGGATTATGGATTCCATGCCCCAACGATGTCATG 12119 Query 160095 GCCTGTGTTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCACTTGATGAGTTGCA 160154 |||||| ||||||| | ||| | ||||| ||||| |||||| || |||||| | Sbjct 12120 GCCTGTTGCAGGAACTCTCATGATTGAACCCACAGAATCTGAGGATAAAGAAGAGTTGGA 12179 Query 160155 AAGATTTGTTGATGCTATG 160173 |||||| ||| || ||| Sbjct 12180 CAGATTTTGTGAAGCCATG 12198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587735960452960