Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq25027 304 1e-77 seq25828 215 6e-51 seq35853 147 2e-30 seq11803 138 1e-27 >seq25027 Length=9736 Score = 304 bits (336), Expect = 1e-77 Identities = 608/896 (68%), Gaps = 10/896 (1%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | ||||| ||||| | || | || || |||||||| || || ||||| Sbjct 6305 CATGACTCCGAACTTTTGGTATTCACCGACCTTCTTCTCGAAGAAATTCGTCTTCCCCTC 6246 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | || ||| | ||||| |||| || |||||| || || ||||| | || ||| Sbjct 6245 GAGCGAGATAAACTCCATGAAATTGAAAGGATTTGGCGTGTTGTAGATTTTCTCGACTCC 6186 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 | || | ||| || | ||||| ||||||| ||| || | ||||| | || || Sbjct 6185 CAGCTCCACTAGAAGACGGTCCGCGACAAATTCAATGTAAAAGGACATCAGTTTGCAGTT 6126 Query 18837 CATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 ||| || || | | || || || || ||||| | ||||| ||||| || || || Sbjct 6125 CATGCCGATCATGTCTACTGGAAGAGCGTCTGTCAAGAATTCCTGTTCAATGACCACGGC 6066 Query 18897 CTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAG----AAGATGTTTAA 18952 || || || | || || ||| || | || | | ||| ||||| | Sbjct 6065 TTCACGGATGATTTCAATAATTCG---TTCCTTTGTCGGCTTCTGCACCAAG-TGTTTGA 6010 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| | || || |||||||| || ||||| ||||||| |||| |||||| || | Sbjct 6009 ACATGAGGCAAGCGAAATCACAGTGCAGTCCTTCGTCTCGTGAAATCAGTTCATTGGAGA 5950 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | || ||||||||||| || |||| ||| |||| ||| || ||||| ||||| |||| Sbjct 5949 AGGTCAAACCAGGCATTAGACCTCGTTTCTTTAGCCAAAAGATAGAGGCAAAGCTTCCAC 5890 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 || || || ||||| || ||||||||||||| | | ||||||| | | || | || Sbjct 5889 TGAAAAAGATGCCTTCCACAGCTGCAAAAGCAATCACACGTTCTCCAAAGTTCGCCTTAT 5830 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | | ||||| |||| ||||| || |||||||| || ||||| |||| || || | Sbjct 5829 CACTGGCGATCCAATTCAAGGCCCAGTCTGCCTTCTTCTTCACACAGGGCAGCGTTTCAA 5770 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | || || ||| || | ||| |||| || | || || | || |||| | | Sbjct 5769 TGGCGTTGAACAGAAACTCTCTCTCCACTGTGTCCTGAATGTACGTATTAATCAGAATGC 5710 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 |||||||||| || || | ||| || ||||| |||||||| ||||| || | | || | Sbjct 5709 TGTACATTTCAGAGTGTACATTCTCCATAGCGATCTGAAACCCGTAGAAGAACCGAGCCT 5650 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCAC 19372 | || | ||| || || || || | ||| ||||| || ||||| || ||||| |||| Sbjct 5649 CGGTGACCTGCACCTCCTGACTGAACCGTTCCACCAAGTTCTCATTCACAATTCCGTCAC 5590 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT-GTA 19431 | ||||||||||| || | ||||| ||| ||||| | ||| || | | || | Sbjct 5589 TGGCTGCAAAAAAGGCAAGCACATGGGAAATGAAATGCCTCTCACATG-GCTGCATCTTC 5531 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | |||||| || |||||||| || || || ||||| || ||||| || |||||||| Sbjct 5530 TCCCAATCGGCCATGTCTTTAGACAAGTCCACCTCTTCCACAGTCCAGAAGGAAGCCTCA 5471 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 || ||||| || | || ||| || || || || || || ||||| || || || Sbjct 5470 GCCTTTTTGTAAAAGTCCCAAATGTCTTTGTACTGAATTGGGAATATCACGAACCT 5415 >seq25828 Length=6072 Score = 215 bits (238), Expect = 6e-51 Identities = 514/773 (66%), Gaps = 20/773 (3%) Strand=Plus/Minus Query 47703 TCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCT 47762 |||||||| || || |||||||| || || || | ||| | |||| || | || Sbjct 5873 TCTGCCAAGCCCTGGACACCAATTCCGATCGGACGATGTCTCATATTCGATGTTTTCGCC 5814 Query 47763 TCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNN 47822 ||||||| ||||| | || ||||| || | ||||||||| Sbjct 5813 TCTGGTACGGGATAATAATTGATATCAATCACCTTATTTAGATTCCTTGTCACCGTTTTG 5754 Query 47823 ACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT---TA---TAACAAACCTATTA 47876 | ||| | ||||| |||||||| |||| || | || | |||||| | || Sbjct 5753 GTCACTTCCTTCAATTTCTTAAAATCGTACTTCTTCTCAGCTACGTTCACAAACATGTTC 5694 Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTA 47934 || || || ||||| || ||||| ||||| ||||||| ||||| |||| | | | Sbjct 5693 AGGGCGATCGATGCCAGGTTACAGACAGCCACCTCATCTTTGGAGCTGTAT--TCCACAA 5636 Query 47935 TTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGT 47994 | || | || ||||||| ||| ||||| || | ||| || ||||| | | | Sbjct 5635 TCTCTGTGCACAGATTACTGCATCGAATAGTGCCGATATTCTGCTGATTGCTCTTTCTAT 5576 Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || ||||| ||||||||| |||| ||||||| || | ||| | || |||| Sbjct 5575 TACAGGCATCCTTATAAAGCATATAAGGCATTCCAGTCTCCACTTGACTTGTGATAATAG 5516 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGT---TCGTATT 48111 |||||| | |||| |||| || | | | | || | | | || || | Sbjct 5515 CCATCCAAAGA-TCCTGTGCTTTG--ACCTTTTTTACATATTTCCCTTCTGACTCATACT 5459 Query 48112 TAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTA 48170 | |||| || || ||||||||||| ||| ||| || | || ||||| | || | | Sbjct 5458 TCATATACAATTTATCAAATTCATCTCCCCAACA-ATCAAACAATCCAGGGGAATCGTCA 5400 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||||||||||| |||| || ||| | || || || |||| || | ||||| ||| Sbjct 5399 GGACACATCAAGCACCATTCGCCATTCTCTTCCACCCTCTTCATGAACAAGTCTGGAATC 5340 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAG 48289 |||||||| ||||||||| |||| || | || ||| | || ||||| | ||||| Sbjct 5339 CAAAGAGCGTAAAATAAATCTCTAGCTCGTTCTTTTTCCTCTCCTGTATTCTTCTTTAAA 5280 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 ||||||||| || | ||| || |||||||| || |||||||| || ||| | || || Sbjct 5279 TTCAAGAAA-TCAAATATGTCGGCATGCCACGGCTCTAAATAAATGGCCCAGGCCCCGGG 5221 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || ||| || || |||||||| | ||||| ||| | || ||||| | | | |||||||| Sbjct 5220 TCTTTTGTTTCCGCCTTGATCCACATATCGGGCCATGTTATTATATAATTTCAACATTGG 5161 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC 48462 |||| |||| || | ||||| |||| | || || ||||| | |||| Sbjct 5160 TACAAGGCCATCGGAGAATCCATTTATTCCGGCGATGTAGCTTCCCTTGGCTC 5108 Score = 131 bits (144), Expect = 2e-25 Identities = 274/406 (67%), Gaps = 3/406 (1%) Strand=Plus/Minus Query 47026 ACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAAT 47085 |||| || ||||| | ||| | |||| | ||||| || || ||||||||| || Sbjct 739 ACATTCCGGTCTTAAGACCGAGTTTCCAAGCGTAGAAGTGGATTGAAGTTAATTTTCCAT 680 Query 47086 AACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTAT 47145 | | ||| | || ||||| |||| || ||||| ||||||||||| ||||||| || Sbjct 679 AGTTCGGTGCCACAACGTGAATGTTAAAAGCCTGACTTTGATCAATAAAGGCACCTCGAT 620 Query 47146 CAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTT 47205 |||| ||||||| | | || || || ||||| |||||||| |||| | Sbjct 619 CAGCAGCCATATTCATTGTTGCCTTTACACTGATTTCCCAAACTGTTTTGTAAAGGGCTC 560 Query 47206 TAATGTCTTCTGGGAGAT-TAGTAT--TTTGAATAGATCCTCCgttttctataattttgt 47262 || || ||||| | | |||||| ||||||| ||||| || | | || ||||||| Sbjct 559 GGATTTCATCTGGAATTTCTAGTATATTTTGAATGGATCCATTGTGTGCAATGATTTTGT 500 Query 47263 tttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAA 47322 | || | |||| ||| | || |||| ||||| ||| | | |||| |||| | Sbjct 499 TCTTCATGTCATCATTCCACAATTCCAGTTCGGTTAAGTCTTTCAGCAAATGACGATTCA 440 Query 47323 CAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTA 47382 | | || ||||||||||| | |||| ||| | || || || || || || || | Sbjct 439 CCACCTGGAATTCTCCAGACAAAACTCGACGATTGTAGATGTTCGACGTGTAAGGCTCAA 380 Query 47383 TAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||||| || ||||| | |||||||| || || || || ||||| Sbjct 379 ACGATTCGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCAT 334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 || || ||||| ||| | | ||| || ||| || ||||| | || || | ||| Sbjct 4603 TTGTAGGTTTCTATAGCGGCATCAATGTCCTCGCCGTGAATACCAACAGCCACCCTCATC 4544 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 ||||| | || |||||||| | | ||| || || ||||| | ||| ||| |||| Sbjct 4543 AACATGTGCTGTGGTCTTTCCGCTACCTTGCCTTTGATCTTCAATAAATACGATCGTTCC 4484 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 ||||||||||| ||||| || |||||| ||| || ||||| |||||||| |||||| Sbjct 4483 AATGTTTTAAATCCAAAGTAATTGTATCCAAAATCACGATCATAAATAATTGCTGAATT 4425 >seq35853 Length=3953 Score = 147 bits (162), Expect = 2e-30 Identities = 311/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTG-GATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 || || || ||||| | ||||| | |||| || | ||| ||||||||||||||||| || Sbjct 3363 TTATCGACTGTAAATTGAATTGCGTTTACA-GCAGGTTTCGTTCGTAAATAATACATTCC 3421 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||||| | || | ||||||||||||| || || ||||| || ||| | || Sbjct 3422 CGTCTTCAGTCCCAGTTTCCATCCATAGAAGTGAATCGAAGTTAGCTTTCCGTAATTCGG 3481 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 | | | | ||||| |||| ||| || || ||||||||||| || |||| |||||| || Sbjct 3482 TGCAGCGACGTGAATGTTAAAAGACTGGCTTTGATCAATAAAGGCTCCTCGATCAGCAGC 3541 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | || || || ||||| || |||||||||| | |||||| Sbjct 3542 CATGTTGATTGTAGTTTTTACACTAATTTCCCACACAGTTTTATAAAGAGCTCGAATGTC 3601 Query 47213 TTCTGGGAGAT----TAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 ||| || | | || |||||||||| ||||| || | | || |||||||| || | Sbjct 3602 TTCAGGAATTTCCTCTA-TATTTTGAATGGATCCATTGTGTGCAATGATTTTGTTCTTCA 3660 Query 47269 attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTT 47328 |||| ||| | || |||| || || ||| | | |||| |||| || | | Sbjct 3661 TGTCATCATTCCACAATTCCAGTTCGGTCAAGTCTTTCAGCAAATGACGATTCACCACCT 3720 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATT 47388 | ||||| || |||| |||| ||| | || || || || || || || | |||| Sbjct 3721 GGAATTCCCCTGATAAAACTCGTCGGTTGTAGATGTTGGACGTGTAAGGCTCAAACGATT 3780 Query 47389 CATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 | || ||||| | |||||||| || || || || ||||| Sbjct 3781 CGTTGTTTCCGAGGATTTGAGCTGTGGAAGCGGTTGGCAT 3820 >seq11803 Length=6467 Score = 138 bits (152), Expect = 1e-27 Identities = 342/515 (66%), Gaps = 4/515 (1%) Strand=Plus/Minus Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCG 48002 || ||||||| ||| ||||| || | || || ||||| | | ||||| ||| Sbjct 6465 CACAGATTACTGCATCGAATAGTGCCGATGTTCTGCTGATTGCTTTTTCTATTACAGGCG 6406 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || || ||||||||| | || ||||| || || | || | || |||| ||||| Sbjct 6405 TCTTTATAAAGCATATATGGAGTTCCGGTCTCCACTTGGCTTGTGATAATAGCCATCCAA 6346 Query 48063 ACAGTCCTAGCCTTT-ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 | ||||| |||| || | | ||| | || ||| || || |||| || Sbjct 6345 AG-GTCCTGTGCTTTGATCTTTTTTACATATTTCTCTTCTGATTCATACTTCATATACAA 6287 Query 48122 CTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 || ||||||||||| ||| ||| || | || ||||| | || ||||| ||||||| Sbjct 6286 TTTATCAAATTCATCTCCCCAACA-ATCAAACAATCCAGGGGAATCGTTAGGGCACATCA 6228 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | ||||||| ||| | || ||| || |||| || | ||||| ||||| || || Sbjct 6227 AGCACCAATCACCATTCTCTTCTACCCTCTTCATGAACAAGTCTGGAATCCATAGGGCGT 6168 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 ||| ||||| || | | |||||| || || |||| | || || | ||||| | Sbjct 6167 AAAACAAATCTCTGGCGCGATATTCTTCCTTTCCCGTATTTTTCTTCAGGTTCAGAAAAT 6108 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | | || || |||||||| ||||| | || | |||| | | || |||| ||| || | Sbjct 6107 CAAAAATGTCTGCATGCCACGGTTCCACGTAAACTGCCCATGCGCCGGGTCTTTTGTTCC 6048 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 | ||||| || | || | ||| | || || ||| ||||||||| || || | || | Sbjct 6047 CGCCTTGGTCCAGATGACGGGCGGCGTTATTGTAAGTTCTTAACATCGGCACCAGGCCTT 5988 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 | ||||| |||| ||||| | ||| || |||||| Sbjct 5987 TGGATATTCCATCTGTTCCAGCAATGTAGCTTCCA 5953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561807467525040