Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clogmia_20albipunctata_20[genbank_20GCA_5F001014945.1_202015-05-29] 42,886 sequences; 256,248,749 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq32567 273 2e-67 seq25744 147 2e-29 seq15159 98.7 8e-15 seq42655 91.5 1e-12 seq26907 91.5 1e-12 >seq32567 Length=6805 Score = 273 bits (302), Expect = 2e-67 Identities = 554/813 (68%), Gaps = 16/813 (2%) Strand=Plus/Plus Query 551799 CATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTA 551856 ||| | ||||| || || |||||||||||| |||| ||||| | ||| |||| || Sbjct 3151 CATTTAGGTGGAGAGGACTTTGATAATAGAATGGTCAATCAT--TTCGTTCAAGAGTTCC 3208 Query 551857 AACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTG 551916 || | || |||| || || || | | | ||||||| | |||||||| |||| Sbjct 3209 AAAGGAAGCACAAGAAAGACCTTACTTCGAATAAGAGAGCTCTTAGACGTCTAAGGACTG 3268 Query 551917 CTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATT 551976 | || ||||| || || || | || ||| | | | ||| | | || || |||| | Sbjct 3269 CCTGTGAAAGGGCTAAGAGAACCCTATCAGCATCTTCCCAAGCTAACATCGAGATAGACT 3328 Query 551977 CATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTT 552036 | |||||||| |||||||| | | |||| | ||| | ||||| | |||||||| | Sbjct 3329 CCTTATTTGAAGGAATTGACTTTTATACCTCGATTACAAGGGCTAGGTTTGAAGAATTAA 3388 Query 552037 GTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTCAAAG 552095 ||||| || ||||||| || || ||||| || || ||| | | || ||| | ||| Sbjct 3389 ACTCTGACCTGTTTAGAAGTACCATGGAACCTGT-GACTAAGGCTCTTAGGGATGCTAAG 3447 Query 552096 ATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAA 552155 || ||||| | || |||||||||| | |||||||||||||| ||||| || || Sbjct 3448 ATGGATAAGGGGCAGGTTAATGAAATTGTCTTAGTTGGTGGATCTACTAGAATCCCAAAG 3507 Query 552156 ATTCGCGAAATGTT--AAG--TTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||| || | | ||| ||||| ||||||||| | | || | | | || Sbjct 3508 GTTCAGAAACTACTCCAAGAATTCTT----CAATGGTAAGGATCTTAACAAGTCTATCAA 3563 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 ||| || || ||||| || || || || ||| |||| || || ||||| |||| | Sbjct 3564 TCCCGACGAAGCTGTGGCTTACGGAGCTGCAGTTCAGGCTGCAATTCTCCATGGAGATCA 3623 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 |||| | | ||| | || | | | |||||||||||||||||||| || | || Sbjct 3624 GTCTGAACAGGTTCAAGACCTTCTTTTGTTGGATGTTACTCCTCTATCTCTGGGAATTGA 3683 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 || | |||||| |||||||| | | ||| | ||||||||||| || || ||| | Sbjct 3684 GACTGCTGGAGGAGTTATGACTGTTTTAATCAAAAGAAATACTACAATCCCCACGAAACA 3743 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 ||| ||| | || || || ||||| ||| ||| ||| |||||| | ||||| Sbjct 3744 GACTCAAACTTTTACCACTTACTCCGATAACCAACCTGGAGTTCTTATTCAAGTCTTTGA 3803 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG-TACTTTTAATTTAGAAGGTA 552510 |||||||||| | || || || || |||| || || | || |||| || || | Sbjct 3804 AGGAGAAAGAGCTATGACAAAGGACAACAATCTCCTCGGAAAATTCGAATTGAG-TGGAA 3862 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 ||||||| ||||| | ||||| || ||||| ||||| |||||||| |||||||| |||| Sbjct 3863 TTCCTCCAGCTCCCAGAGGAGTTCCTCAAATCGAAGTCACTTTCGACATCGATGCTAATG 3922 Query 552571 GAATTTTGAATGTGACTGCTTGTGATAAATCTA 552603 |||| |||| || || ||| || || |||| Sbjct 3923 GAATCATGAACGTTACAGCTATAGAAAAGTCTA 3955 >seq25744 Length=34136 Score = 147 bits (162), Expect = 2e-29 Identities = 257/371 (69%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 550160 AATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG 550219 ||||| | |||||||||||||| || |||||||| || || | | ||| ||||| | Sbjct 26082 AATCCCAAGAATACTATTTTTGACGCCAAACGTTTGATCGGTCGTAAATTTGATGATCAG 26023 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT 550279 | | || | || || ||||||||||| |||||| | ||| ||||| ||||| Sbjct 26022 AAGATCCAAGAGGACATCAAGCATTGGCCGTTCCAAGTGTACGATGAGTCTGGTAAACCC 25963 Query 550280 TATATTGAAGCT---ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCA 550336 | |||| | | | ||| ||||| |||| ||| | || ||| | | Sbjct 25962 AA-ATTGGTGGTTGAATTCA--AAGGAGAAACAAAACGATTCGCCCCTGAAGAGGTCAGC 25906 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG 550396 || |||||||| | |||||||| || ||| | || |||| | | || || Sbjct 25905 TCCATGGTTTTGACCAAAATGAAGGAAGTAGCTGAGGTTTACCTTGGAGGAAAGGTGACC 25846 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 ||||| || || ||||| ||||| ||||| || ||| ||||||||||| || || ||| Sbjct 25845 GATGCCGTCATCACTGTCCCAGCCTATTTCAACGACAGCCAACGTCAAGCCACAAAGGAT 25786 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| ||||||||| || |||||||| || |||||||| ||||| || || ||||| Sbjct 25785 GCTGGAGCTATTGCTGGGCTGAATGTTCTCCGAATTATCAACGAACCCACAGCCGCTGCT 25726 Query 550517 CTTGCATATGG 550527 | || ||||| Sbjct 25725 TTGGCCTATGG 25715 >seq15159 Length=35351 Score = 98.7 bits (108), Expect = 8e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 720761 TGTAAAAAGCATAACAATATGATTTTTCTCCATCCCTTCCTGCACGACCAATTTCTTGAT 720820 ||||||| | |||||| || || ||| || |||||||| || || | |||||||| Sbjct 9475 TGTAAAACGTGTAACAAGTAGAAGGTTGTCCGTCTCTTCCTGCTCGTCCTAATTCTTGAT 9534 Query 720821 AATATCCTTCAATATTTTTAGGTGCACCATAATGTATAACTGCTCTCACATCACTTTTAT 720880 |||| | || |||| ||||| || ||||| | ||| || ||| ||||| ||| | Sbjct 9535 AATAACTCTCTATATCTTTAGAAGCTCCATAGTTTATCACCATTCTTACATCCGGTTTGT 9594 Query 720881 TTATTCCCATTCCAAAAGCAATCGTCGCAACCATAACTT 720919 |||||||||||||||||||| || ||| | || |||| Sbjct 9595 CGATTCCCATTCCAAAAGCAATAGTGGCAGCGATGACTT 9633 >seq42655 Length=1778 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || || ||||| | ||||| ||||| ||||| || ||| || | || || || Sbjct 1766 GTCACAGAGGCAGTTGTCACTGTTCCAGCGTATTTCAACGACAGCCAGAGACAGGCCACC 1707 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || || || ||| |||||||| || ||||| | || |||||||| || || |||||| Sbjct 1706 AAGGACGCCGGAGCCATTGCTGGTCTGAATGTGCAGCGCATTATCAACGAGCCAACTGCT 1647 Query 550511 GCTGCACTTGCATATGGACTTGATA--AACATAATGATCAAGAACTTAATGTACTCATCT 550568 |||||||| || ||||| || || | ||| | | | | |||| ||||| || || | Sbjct 1646 GCTGCACTGGCCTATGGTCTGGACAAGAACTTGAAGGGCGAGAA--GAATGTTCTGATTT 1589 Query 550569 TTGATTGTGGAGG 550581 | |||| ||||| Sbjct 1588 TCGATTTGGGAGG 1576 >seq26907 Length=2622 Score = 91.5 bits (100), Expect = 1e-12 Identities = 173/255 (68%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||| |||||||| | ||||| || | || ||||||||| ||||| || Sbjct 1416 GAAACCGTTGGAGGAGTGATGACCAAATTGATTCCAAGAAATACTGTGATTCCAACCAAG 1357 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 ||||| | | || || || ||||| ||||| |||| || |||||| | | | Sbjct 1356 AAATCCCAGATCTTCTCCACTGCCTCAGACAATCAGCACACTGTCACTATTCAAGTCTAT 1297 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||||||| || | | || ||||| ||| | || || | || |||| || Sbjct 1296 GAAGGAGAACGACCAATGACAAAAGACAATCACTTGCTGGGCAAGTTCGATTTGACTGGA 1237 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 || || || || || || || | || ||||||||||| | |||||| ||||||||||| Sbjct 1236 ATCCCACCAGCGCCACGAGGCATCCCTCAAATTGAAGTCAGTTTCGAGATCGATGCCAAC 1177 Query 552570 GGAATTTTGAATGTG 552584 || |||||| | ||| Sbjct 1176 GGTATTTTGCAAGTG 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027027994904140